Miyakogusa Predicted Gene

Lj1g3v2996620.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2996620.2 Non Characterized Hit- tr|D8T4T9|D8T4T9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,57.14,5e-17,ZF_RING_1,Zinc finger, RING-type, conserved site;
ZF_RING_2,Zinc finger, RING-type; RING/U-box,NULL;,CUFF.29844.2
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g013720.1 | zinc finger, C3HC4 type (RING finger) protein ...   234   2e-62
Medtr5g043680.1 | zinc finger, C3HC4 type (RING finger) protein ...   188   8e-49
Medtr3g088535.1 | preprotein translocase SecA family protein, pu...    48   2e-06

>Medtr6g013720.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr6:4314859-4318207 | 20130731
          Length = 266

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 106/123 (86%), Positives = 116/123 (94%)

Query: 1   MWNFASSCISGSVGLKNDCLKPTHSASECSDDETSMTTREEGLECPICWESFNIVENVPY 60
           MWNFAS+CI+G+VGLK D   PTHSASECSDDETS+  REEGLECP+CWESFNIVENVPY
Sbjct: 1   MWNFASNCIAGNVGLKKDSSNPTHSASECSDDETSVVGREEGLECPVCWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNYF 120
           VLWCGHTLCKNCILGLQWA VKFPTLP+QLPLFISCPWCN+LSFRLV++GNL+FPRKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWATVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLRFPRKNYF 120

Query: 121 LLW 123
           LLW
Sbjct: 121 LLW 123


>Medtr5g043680.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:19193768-19196554 | 20130731
          Length = 262

 Score =  188 bits (478), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 106/124 (85%), Gaps = 2/124 (1%)

Query: 1   MWNFASSCISGSVGLKNDCLKPTHSASECSDDET-SMTTREEGLECPICWESFNIVENVP 59
           MWNFAS  ++ S+G+K    +P  S +ECSDDE  S  +++EGLECPICWESFNIVENVP
Sbjct: 2   MWNFASHALT-SIGMKRSSTEPILSCAECSDDEVCSNASKDEGLECPICWESFNIVENVP 60

Query: 60  YVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNY 119
           YVLWCGHTLCKNC+LGLQWA++KFPT  I++P F+SCPWC++LSFR +++GN+KFPRKN+
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVMKFPTQQIRIPFFVSCPWCHLLSFRFIYKGNMKFPRKNF 120

Query: 120 FLLW 123
           FLLW
Sbjct: 121 FLLW 124


>Medtr3g088535.1 | preprotein translocase SecA family protein,
           putative | HC | chr3:40247544-40249238 | 20130731
          Length = 564

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 40  EEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWC 99
           EE  ECP+C ++++    +P VL CGHT+C+ C++           LP + P  I CP C
Sbjct: 2   EELPECPVCLQNYDDENAIPRVLSCGHTICEACLV----------HLPPRFPNTIRCPAC 51

Query: 100 NILSFRLVHQGNLKFPRKNYFLL 122
             L     +QG    P KN  LL
Sbjct: 52  TQLVKYSPNQGPSSLP-KNIDLL 73