Miyakogusa Predicted Gene

Lj1g3v2978140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2978140.1 Non Characterized Hit- tr|A9PHB0|A9PHB0_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,43.8,5e-19,STRUCTURAL CONSTITUENT OF RIBOSOME,NULL; 60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae; seg,NULL,CUFF.34321.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g010930.1 | 60S ribosomal protein L34 | HC | chr7:2812865-...   250   7e-67
Medtr6g012390.1 | 60S ribosomal protein L34 | HC | chr6:3751361-...   228   2e-60
Medtr2g021720.1 | transmembrane protein, putative | HC | chr2:74...    78   7e-15
Medtr2g021720.2 | transmembrane protein, putative | HC | chr2:74...    77   1e-14

>Medtr7g010930.1 | 60S ribosomal protein L34 | HC |
           chr7:2812865-2811458 | 20130731
          Length = 217

 Score =  250 bits (639), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 152/201 (75%), Gaps = 2/201 (0%)

Query: 21  MANSLDLGSKPRNRKAANSLQVPPCQRSQSXXXXXXXXXXXXXXXXXXXXPYVKAVMTES 80
           MANS+DL +K RNRK  NSLQ+P C+RS+S                    PY++ VM+ES
Sbjct: 18  MANSIDL-AKSRNRKTLNSLQIPQCERSRSAVVDVVIFIAVVIALGFLVFPYIQFVMSES 76

Query: 81  FKIGGVIMNLMREEVSGTPWIYVFIGVFVACAVFTTWLLVASTTRKCGNRYCKGLKKAAE 140
           FK+ G+ M+L++EEV+  P IYV +GV V+CAV  TW  +A T+RKC N  CKGLK AAE
Sbjct: 77  FKLCGLFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTSRKCSNPNCKGLKNAAE 136

Query: 141 FDIQLETEDCVKNSPSL-SKDGTVKKGLFKLPCEHHRELEAELKKMAPPNGRAVLVLRAK 199
           FDIQLETEDCVKNSPSL    G +KKGLFK+PC+HHRELEAELKKMAP NGRAVLVLR K
Sbjct: 137 FDIQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELKKMAPVNGRAVLVLRGK 196

Query: 200 CGCSVGRLEVPGPRKNRKMKK 220
           CGCSVGRLEVPGP+KNRK+KK
Sbjct: 197 CGCSVGRLEVPGPKKNRKIKK 217


>Medtr6g012390.1 | 60S ribosomal protein L34 | HC |
           chr6:3751361-3750714 | 20130731
          Length = 215

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 148/215 (68%), Gaps = 15/215 (6%)

Query: 21  MANSLDLGSK-------------PRNRKAANSLQVPPCQRSQSXXXXXXXXXXXXXXXXX 67
           MANS++LGSK              RN   +NS+++PPC RS+S                 
Sbjct: 1   MANSIELGSKYSKSKQTNQFQRNRRNHSLSNSVKIPPCDRSRSAMIDVVMFIAVVIACGF 60

Query: 68  XXXPYVKAVMTESFKIGGVIMNLMREEVSGTPWIYVFIGVFVACAVFTTWLLVASTTRKC 127
              PYV+ ++ +SF+I  ++  L+ EEVS  P+IY+ IG+ V CA   TW ++  T+ KC
Sbjct: 61  LFFPYVELLVIKSFQIMSMMCFLIMEEVSYAPYIYISIGISVVCAALATWGVIVCTSNKC 120

Query: 128 GNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTV-KKGLFKLPCEHHRELEAELKKMA 186
           GN  CKGLKKAAEFDIQLETEDCVKNSPS  KDG V KKGLF+LP +HH+ELEAELKKMA
Sbjct: 121 GNPNCKGLKKAAEFDIQLETEDCVKNSPSFVKDGGVCKKGLFELPRDHHKELEAELKKMA 180

Query: 187 PPNGRAVLVLRAKCGCSVGRLEVPGP-RKNRKMKK 220
           P NGRAVLVLRA+CGCSVGRLEVPGP +K RK+KK
Sbjct: 181 PINGRAVLVLRARCGCSVGRLEVPGPAKKLRKIKK 215


>Medtr2g021720.1 | transmembrane protein, putative | HC |
           chr2:7411576-7403070 | 20130731
          Length = 208

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 20/129 (15%)

Query: 99  PWIYVFIGVFVACAVFTTWLLVASTTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLS 158
           P+I  FI +F    VF   +   + +RKC  + CKGLKKA EFD+++E            
Sbjct: 79  PYILAFI-IFSIGFVFGFEICCGARSRKCERKGCKGLKKATEFDLKIE------------ 125

Query: 159 KDGTVKKGLFKLPCEHHRE-------LEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPG 211
           + G       KLP +   E       L +EL+KMAP NG+A+L+ RA CGC V +LE  G
Sbjct: 126 RLGLGFGEYEKLPWKGGSEGNPDYECLRSELRKMAPVNGKALLLFRAPCGCPVAKLEASG 185

Query: 212 PRKNRKMKK 220
           P+K ++ K+
Sbjct: 186 PKKGKRQKR 194


>Medtr2g021720.2 | transmembrane protein, putative | HC |
           chr2:7411555-7406998 | 20130731
          Length = 195

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 20/129 (15%)

Query: 99  PWIYVFIGVFVACAVFTTWLLVASTTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLS 158
           P+I  FI +F    VF   +   + +RKC  + CKGLKKA EFD+++E            
Sbjct: 79  PYILAFI-IFSIGFVFGFEICCGARSRKCERKGCKGLKKATEFDLKIE------------ 125

Query: 159 KDGTVKKGLFKLPCEHHRE-------LEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPG 211
           + G       KLP +   E       L +EL+KMAP NG+A+L+ RA CGC V +LE  G
Sbjct: 126 RLGLGFGEYEKLPWKGGSEGNPDYECLRSELRKMAPVNGKALLLFRAPCGCPVAKLEASG 185

Query: 212 PRKNRKMKK 220
           P+K ++ K+
Sbjct: 186 PKKGKRQKR 194