Miyakogusa Predicted Gene

Lj1g3v2938540.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2938540.1 Non Characterized Hit- tr|K0RBM4|K0RBM4_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,23.88,0.00000000003,DUF3754,Protein of unknown function
DUF3754,NODE_55749_length_1672_cov_68.294853.path1.1
         (465 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101420.1 | DUF3754 family protein | HC | chr2:43612483-43...   678   0.0  

>Medtr2g101420.1 | DUF3754 family protein | HC |
           chr2:43612483-43604716 | 20130731
          Length = 739

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/472 (76%), Positives = 410/472 (86%), Gaps = 11/472 (2%)

Query: 1   MRSDYHISNSVEPVGQNSADS---EKQVVANGKDSSLASNDIIEIEDR--KVFQDMQVQL 55
           MRSDYH++N+V+   Q   D    E +VVANG +S+ A++DI++  +   KV+QD+Q+Q 
Sbjct: 152 MRSDYHLTNAVQ--TQEDEDPLVPETRVVANGNNSNYANDDILQTGNGNGKVYQDIQLQP 209

Query: 56  ENSMLSDSGFDLRSLLRSLEGITSKKDYEGGSRVAVATRFQRAFMQLLSNAQFEELSARD 115
           + SMLS+    L SLLRSL+ IT   D + GSRV +ATRFQRAFMQLLSNAQFEELSARD
Sbjct: 210 QKSMLSEYALSLGSLLRSLD-ITPNNDSDTGSRVTIATRFQRAFMQLLSNAQFEELSARD 268

Query: 116 LMLTSALNTDYLLTLPIYVDWKRAYESNAIIFRRGYATEKQSGLLIVEKLDYLQSKLLQA 175
           L LTSALNTDYLLTLPIYVDW++AYESNAIIFRRGYATEKQ+GLLIVEKLDYLQS+LLQ 
Sbjct: 269 LTLTSALNTDYLLTLPIYVDWEKAYESNAIIFRRGYATEKQNGLLIVEKLDYLQSRLLQT 328

Query: 176 IFSVISKPLARLGTSISELYENASQKREVQNWTERLRLWLKELSVFQKSLLYGDHAS--D 233
           IF VISKPLA+LG+ ISE+    SQK EV+NWTERL+LWLK+LSVFQKSL+Y D+ +  D
Sbjct: 329 IFFVISKPLAKLGSKISEVSGIISQKHEVRNWTERLKLWLKKLSVFQKSLIYTDNDNELD 388

Query: 234 EQIGVSQVLNAELPIWLAAQKAVALYEGILSSVGPRERLLRRLLSWIGLIPPTPETPFEV 293
           EQI  +QV NAELPIWLAAQ+AVA YEGILS VGPRERLLRRLLSWIGLIPPTPE PF+V
Sbjct: 389 EQIDENQVPNAELPIWLAAQRAVARYEGILSPVGPRERLLRRLLSWIGLIPPTPEPPFQV 448

Query: 294 NSDSNSPEPYLRPTFLSRISLSDIWRPATRKACRSDPWKILRTSISILFSQSVLQEPAFE 353
            +D +SPEPYLRPTFLSRISLSD WRPATRK CR+DPWK+L+TSISILFS+SVLQEPAFE
Sbjct: 449 ENDGDSPEPYLRPTFLSRISLSDTWRPATRKYCRNDPWKMLKTSISILFSRSVLQEPAFE 508

Query: 354 ELILLYTKEAGEINAKDKAEVPSLQLKIYERIPIPDLAVIFPHKKLSFRIIDTVRLDAAT 413
           ELILLYTKE  EIN KDKAEVPSLQLKIYE+IP PDL V+FPHKKLSFRIIDTVRLD A+
Sbjct: 509 ELILLYTKEV-EINGKDKAEVPSLQLKIYEKIPFPDLPVVFPHKKLSFRIIDTVRLDVAS 567

Query: 414 ILGLLAYFINYKFENVLDSPSAILLDVLAISALIIYGTRVVLGYKQTWDRYQ 465
           ILGLLAYFINYKFEN+ DSPSAILLDV+AISALII+G+RVVLGYKQTWDRYQ
Sbjct: 568 ILGLLAYFINYKFENLSDSPSAILLDVVAISALIIFGSRVVLGYKQTWDRYQ 619