Miyakogusa Predicted Gene

Lj1g3v2923020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2923020.1 Non Characterized Hit- tr|I3STC5|I3STC5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.19,0,seg,NULL;
HABP4_PAI-RBP1,Hyaluronan/mRNA-binding protein; Stm1_N,Stm1,
N-terminal; NUCLEAR RNA BINDI,CUFF.30385.1
         (370 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g081660.1 | nuclear RNA-binding-like protein | LC | chr7:3...   293   3e-79
Medtr8g006960.1 | nuclear RNA-binding-like protein | HC | chr8:1...   282   4e-76

>Medtr7g081660.1 | nuclear RNA-binding-like protein | LC |
           chr7:31248457-31243507 | 20130731
          Length = 583

 Score =  293 bits (749), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/387 (48%), Positives = 206/387 (53%), Gaps = 30/387 (7%)

Query: 1   MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
           MAT NPFDLLGDDAEDPSQLI                                 +PSKP 
Sbjct: 1   MATTNPFDLLGDDAEDPSQLIVSEQLKAAAAPPAAKKGAVKEQGKPNKPAL---LPSKPT 57

Query: 61  PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXXNRD---------------FSNDENSF 105
           PPAQAVR++RNE                        D               +SND+NSF
Sbjct: 58  PPAQAVRESRNEGGRGGRGFGGRGGDRDRGFGGRGGDRGFGGGRGGRGFGRDYSNDDNSF 117

Query: 106 PASGAPDNLGPFE-GD--SEKASEXXXXXXXXXXXXXXXXXXXXXFSNGEADEEGRPRRA 162
           PASGAP+N GP E GD  SE+ S                      F+NG+A EEGRPRR 
Sbjct: 118 PASGAPENQGPVEEGDRNSERRSYGGPRGPYRGGRRGG-------FNNGDAGEEGRPRRT 170

Query: 163 FERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVE-DVADGX 221
           FERHSGTGRG+ FKREGAGRGNWGT++DEIAQVT+EV NE EKNL DEKPAVE DVA+G 
Sbjct: 171 FERHSGTGRGNDFKREGAGRGNWGTETDEIAQVTEEVMNEGEKNLGDEKPAVEADVAEGN 230

Query: 222 XXXXXXXXXXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKD 281
                                 YEKVLEEKRKALQ  KTE RKVD K FE+MQ LSCKKD
Sbjct: 231 KDSPANEAEEKEPEDKEMTLEEYEKVLEEKRKALQTLKTEERKVDTKAFETMQALSCKKD 290

Query: 282 NNDIFAKLGSXXXXXXXXXXXXXXXXXSVSINEFLKPAEGETYYPXXXXXXXXXXXXXXX 341
           N +IFAKLG+                 SVSINEFLKPAEGE++Y                
Sbjct: 291 NTEIFAKLGADKDKRKEAYDKEEKAKKSVSINEFLKPAEGESHY-NSGGRGRGRGGRGAR 349

Query: 342 XXXXXXNATSNAPAPSIEDPGHFPTLG 368
                 N+ SN PAPSIEDPGHFPTL 
Sbjct: 350 GGGFRGNSYSNVPAPSIEDPGHFPTLA 376


>Medtr8g006960.1 | nuclear RNA-binding-like protein | HC |
           chr8:1136572-1140607 | 20130731
          Length = 373

 Score =  282 bits (721), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 179/376 (47%), Positives = 200/376 (53%), Gaps = 12/376 (3%)

Query: 1   MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
           MAT+NPFDLLGDDAEDPSQLI                                 +PSKPL
Sbjct: 1   MATINPFDLLGDDAEDPSQLIAAEQQKAAAAAAAAPKKGLDQGKQTGAAKKPAQLPSKPL 60

Query: 61  PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXXNRDFSNDENSFPASGAPDNLGPFEGD 120
           PP+QAVR++RNEPS                        SND+NS PA   P N G FEGD
Sbjct: 61  PPSQAVRESRNEPSRGGRGGGRGFGRGRGDGGFRRDF-SNDDNSLPAP--PANQGSFEGD 117

Query: 121 SEKASEXXXXXXXXXXXXXXXX-XXXXXFSNGEADEEGRPRRAFERHSGTGRGSGFKREG 179
           S   +E                      FSNGEA E GRPRR F+RHSGTGRG GFKREG
Sbjct: 118 SANPTERRGYGAPRTPYRVGGGPERRGGFSNGEAGE-GRPRRTFDRHSGTGRGGGFKREG 176

Query: 180 AGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVED---VADGXXXXXXXXXXXXXXXX 236
           AGRGNWGTQSDEIAQVTDEVANETEKN++++KP  E+    ADG                
Sbjct: 177 AGRGNWGTQSDEIAQVTDEVANETEKNVAEDKPVGEEDAAAADGNKETPAPEAEEKEPED 236

Query: 237 XXXXXXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNNDIFAKLGSXXXXX 296
                  YEKVLEEKRKAL  +   GRKVD KEFES++PLSCKK+N++IFAKLGS     
Sbjct: 237 KEMTLEEYEKVLEEKRKALNVKTDGGRKVDTKEFESLKPLSCKKENDEIFAKLGS-DKDR 295

Query: 297 XXXXXXXXXXXXSVSINEFLKPAEGETYY---PXXXXXXXXXXXXXXXXXXXXXNATSNA 353
                       ++SINEFLKPAEGE YY                         NA  N 
Sbjct: 296 RKDAIEKEKARKALSINEFLKPAEGEKYYNPGGRGGRGGRGGRGGSRGGGGYGGNAYGNV 355

Query: 354 PAPSIEDPGHFPTLGG 369
            APSIEDPG FPTLGG
Sbjct: 356 SAPSIEDPGQFPTLGG 371