Miyakogusa Predicted Gene

Lj1g3v2908510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2908510.1 tr|A9U0Y0|A9U0Y0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_173084,33.83,0.00000000000004,Small MutS-related
domain,Smr protein/MutS2 C-terminal; Smr,Smr protein/MutS2 C-terminal;
DUF1771,Do,CUFF.29661.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g081260.3 | Smr (small MutS-related) domain protein | HC |...   551   e-157
Medtr7g081260.1 | Smr (small MutS-related) domain protein | HC |...   551   e-157
Medtr7g081260.2 | Smr (small MutS-related) domain protein | HC |...   539   e-153
Medtr6g034130.1 | Smr (small MutS-related) domain protein | HC |...   100   3e-21
Medtr6g034165.1 | DUF1771 domain protein | LC | chr6:11554165-11...    73   6e-13

>Medtr7g081260.3 | Smr (small MutS-related) domain protein | HC |
           chr7:31002088-31007756 | 20130731
          Length = 432

 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/442 (66%), Positives = 340/442 (76%), Gaps = 20/442 (4%)

Query: 1   MTILAGSSTKKMSSARG-QSSGWAAFDLKQRKKNNLESDADKDPFPALGTSSSMQHVDNK 59
           MT+ A SS KKMS +RG Q SGW AFDLKQ+ KN+++S+ DKDPFP +G+SSSM+H D K
Sbjct: 2   MTVSAESSLKKMSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSSSSMRHGD-K 60

Query: 60  LAKKNRVPSKPFSSVILPAKNFPPLKEGGNGKKTMLVFDSTEKCHGNTVQGDVNLAIKRL 119
             KK  VP KPFSSV++P  NFPPLKE GNG+K +L  DS   C G T Q DVN   K L
Sbjct: 61  FVKKKHVPLKPFSSVLVPNVNFPPLKEAGNGQKAVLGSDS---C-GTTAQEDVNGPTKML 116

Query: 120 KEQHLWAENSLIEDILAAVDNNVNKASALLETMASAVNFEDNNVSSDP--RATTSDDIT- 176
           KEQH WAENSLI+DILAAV+NNV+KA ALLETMASAVNFE++ V S+P  R   SDD+T 
Sbjct: 117 KEQHPWAENSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTR 176

Query: 177 ----DESLTLENVKDDIPFRSNLVSHLQDNDEDSEVRNASSDQKFSGVDNLRFKMNILYS 232
                ESL LE VKDDI F SN+V  LQDN++D E R A S QKFS V      M++L S
Sbjct: 177 VVKTGESLALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSDV------MDLLNS 230

Query: 233 VPVEPEWEDDDVYNSHRKDALRTMXXXXXXXXXXXXXFLKGDHYSAQQHSMKAREEWHAA 292
           VPVEPEWE+DD+Y SHRKDAL+TM             FLKG+H+SAQQHS +AREEWH A
Sbjct: 231 VPVEPEWEEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNA 290

Query: 293 DKLNTEAATKILGIRNNENDIWKLDLHGLHAAEAIQALQGHLYKIESQGFPKNTATS-SV 351
           DKLN+EAATKIL IRN++NDI +LDLHGLHAAEA+QALQ HL +IESQGF K+ A S + 
Sbjct: 291 DKLNSEAATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQGFSKSLAPSNNA 350

Query: 352 KENGLAHSTIRSLNVTNRENLDKQAPLRLRSSALHVITGIGNHSRGQAALPSAVRNFLIE 411
           K+NG AHST+ SLN+ + ENLDKQ PLRLRS A+HVITG+GNHSRGQAALP+AVR+FL E
Sbjct: 351 KKNGDAHSTLGSLNLMDWENLDKQVPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSE 410

Query: 412 NRYRFEETRPGAITVWPKFRQS 433
           NRYRFEE RPG ITVWPKFRQS
Sbjct: 411 NRYRFEEMRPGVITVWPKFRQS 432


>Medtr7g081260.1 | Smr (small MutS-related) domain protein | HC |
           chr7:31002174-31007616 | 20130731
          Length = 432

 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/442 (66%), Positives = 340/442 (76%), Gaps = 20/442 (4%)

Query: 1   MTILAGSSTKKMSSARG-QSSGWAAFDLKQRKKNNLESDADKDPFPALGTSSSMQHVDNK 59
           MT+ A SS KKMS +RG Q SGW AFDLKQ+ KN+++S+ DKDPFP +G+SSSM+H D K
Sbjct: 2   MTVSAESSLKKMSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSSSSMRHGD-K 60

Query: 60  LAKKNRVPSKPFSSVILPAKNFPPLKEGGNGKKTMLVFDSTEKCHGNTVQGDVNLAIKRL 119
             KK  VP KPFSSV++P  NFPPLKE GNG+K +L  DS   C G T Q DVN   K L
Sbjct: 61  FVKKKHVPLKPFSSVLVPNVNFPPLKEAGNGQKAVLGSDS---C-GTTAQEDVNGPTKML 116

Query: 120 KEQHLWAENSLIEDILAAVDNNVNKASALLETMASAVNFEDNNVSSDP--RATTSDDIT- 176
           KEQH WAENSLI+DILAAV+NNV+KA ALLETMASAVNFE++ V S+P  R   SDD+T 
Sbjct: 117 KEQHPWAENSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTR 176

Query: 177 ----DESLTLENVKDDIPFRSNLVSHLQDNDEDSEVRNASSDQKFSGVDNLRFKMNILYS 232
                ESL LE VKDDI F SN+V  LQDN++D E R A S QKFS V      M++L S
Sbjct: 177 VVKTGESLALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSDV------MDLLNS 230

Query: 233 VPVEPEWEDDDVYNSHRKDALRTMXXXXXXXXXXXXXFLKGDHYSAQQHSMKAREEWHAA 292
           VPVEPEWE+DD+Y SHRKDAL+TM             FLKG+H+SAQQHS +AREEWH A
Sbjct: 231 VPVEPEWEEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNA 290

Query: 293 DKLNTEAATKILGIRNNENDIWKLDLHGLHAAEAIQALQGHLYKIESQGFPKNTATS-SV 351
           DKLN+EAATKIL IRN++NDI +LDLHGLHAAEA+QALQ HL +IESQGF K+ A S + 
Sbjct: 291 DKLNSEAATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQGFSKSLAPSNNA 350

Query: 352 KENGLAHSTIRSLNVTNRENLDKQAPLRLRSSALHVITGIGNHSRGQAALPSAVRNFLIE 411
           K+NG AHST+ SLN+ + ENLDKQ PLRLRS A+HVITG+GNHSRGQAALP+AVR+FL E
Sbjct: 351 KKNGDAHSTLGSLNLMDWENLDKQVPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSE 410

Query: 412 NRYRFEETRPGAITVWPKFRQS 433
           NRYRFEE RPG ITVWPKFRQS
Sbjct: 411 NRYRFEEMRPGVITVWPKFRQS 432


>Medtr7g081260.2 | Smr (small MutS-related) domain protein | HC |
           chr7:31002174-31007409 | 20130731
          Length = 420

 Score =  539 bits (1388), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/431 (66%), Positives = 332/431 (77%), Gaps = 20/431 (4%)

Query: 12  MSSARG-QSSGWAAFDLKQRKKNNLESDADKDPFPALGTSSSMQHVDNKLAKKNRVPSKP 70
           MS +RG Q SGW AFDLKQ+ KN+++S+ DKDPFP +G+SSSM+H D K  KK  VP KP
Sbjct: 1   MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSSSSMRHGD-KFVKKKHVPLKP 59

Query: 71  FSSVILPAKNFPPLKEGGNGKKTMLVFDSTEKCHGNTVQGDVNLAIKRLKEQHLWAENSL 130
           FSSV++P  NFPPLKE GNG+K +L  DS   C G T Q DVN   K LKEQH WAENSL
Sbjct: 60  FSSVLVPNVNFPPLKEAGNGQKAVLGSDS---C-GTTAQEDVNGPTKMLKEQHPWAENSL 115

Query: 131 IEDILAAVDNNVNKASALLETMASAVNFEDNNVSSDP--RATTSDDIT-----DESLTLE 183
           I+DILAAV+NNV+KA ALLETMASAVNFE++ V S+P  R   SDD+T      ESL LE
Sbjct: 116 IDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESLALE 175

Query: 184 NVKDDIPFRSNLVSHLQDNDEDSEVRNASSDQKFSGVDNLRFKMNILYSVPVEPEWEDDD 243
            VKDDI F SN+V  LQDN++D E R A S QKFS V      M++L SVPVEPEWE+DD
Sbjct: 176 MVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSDV------MDLLNSVPVEPEWEEDD 229

Query: 244 VYNSHRKDALRTMXXXXXXXXXXXXXFLKGDHYSAQQHSMKAREEWHAADKLNTEAATKI 303
           +Y SHRKDAL+TM             FLKG+H+SAQQHS +AREEWH ADKLN+EAATKI
Sbjct: 230 IYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEAATKI 289

Query: 304 LGIRNNENDIWKLDLHGLHAAEAIQALQGHLYKIESQGFPKNTATS-SVKENGLAHSTIR 362
           L IRN++NDI +LDLHGLHAAEA+QALQ HL +IESQGF K+ A S + K+NG AHST+ 
Sbjct: 290 LSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQGFSKSLAPSNNAKKNGDAHSTLG 349

Query: 363 SLNVTNRENLDKQAPLRLRSSALHVITGIGNHSRGQAALPSAVRNFLIENRYRFEETRPG 422
           SLN+ + ENLDKQ PLRLRS A+HVITG+GNHSRGQAALP+AVR+FL ENRYRFEE RPG
Sbjct: 350 SLNLMDWENLDKQVPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSENRYRFEEMRPG 409

Query: 423 AITVWPKFRQS 433
            ITVWPKFRQS
Sbjct: 410 VITVWPKFRQS 420


>Medtr6g034130.1 | Smr (small MutS-related) domain protein | HC |
           chr6:11530198-11532028 | 20130731
          Length = 169

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 41/161 (25%)

Query: 270 FLKGDHYSAQQHSMKAREEWHAADKLNTEAATKILGIRNNENDIWKLDLHGLHAAEAIQA 329
           + K DH  A Q++  A++E   A +L+ +AA KI  I N +N+IW++DLHGLH  EA   
Sbjct: 16  YHKNDHQLAMQYARIAKDEHRIAGELHRQAAAKIFEITNRKNNIWRIDLHGLHGEEATYF 75

Query: 330 LQGHLYKIESQGFPKNTATSSVKENGLAHSTIRSLNVTNRENLDKQAPLRLRSSALHVIT 389
           LQ  L +I+++  P                                         L VIT
Sbjct: 76  LQERLNEIKTEAKP-----------------------------------------LEVIT 94

Query: 390 GIGNHSRGQAALPSAVRNFLIENRYRFEETRPGAITVWPKF 430
           G+G HS G+  LP  V NFL +N+Y+F+E RPG + VWP +
Sbjct: 95  GVGKHSNGKPVLPIKVPNFLSDNKYQFKEIRPGVLKVWPIY 135


>Medtr6g034165.1 | DUF1771 domain protein | LC |
           chr6:11554165-11557519 | 20130731
          Length = 208

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 57/191 (29%)

Query: 240 EDDDVYNSHRKDALRTMXXXXXXXXXXXXXFLKGDHYSAQQHSMKAREEWHAADKLNTEA 299
           +++++Y ++RKDA                 + K DH  A Q++  A++E   A++L+ +A
Sbjct: 41  KNNEIYITYRKDAWEMKSLASQHDKAAKEAYHKNDHQLAMQYARIAKDEHRIAEELHRQA 100

Query: 300 ATKILGIRNNENDIWKLDLHGLHAAEAIQALQGHLYKIESQGFPKNTATSSVKENGLAHS 359
           A KI  I N +N+IW++DLH                     G     AT  ++E      
Sbjct: 101 AAKIFEITNRKNNIWRIDLH---------------------GLHGEEATYFLQE------ 133

Query: 360 TIRSLNVTNRENLDKQAPLRLRSSALHVITGIGNHSRGQAALPSAVRNFLIENRYRFEET 419
                              R+R            HS G+  L   V NFL +N+Y+F+E 
Sbjct: 134 -------------------RVRK-----------HSNGKPVLLIKVPNFLSDNKYQFKEI 163

Query: 420 RPGAITVWPKF 430
           RPG + VWPK+
Sbjct: 164 RPGVLKVWPKY 174