Miyakogusa Predicted Gene

Lj1g3v2898460.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2898460.3 Non Characterized Hit- tr|K4A243|K4A243_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si032940,43.93,2e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.29669.3
         (328 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |...   158   8e-39
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |...   158   8e-39
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |...   158   8e-39
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |...   158   8e-39
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   146   2e-35
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |...   114   1e-25
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |...   114   1e-25
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |...   114   2e-25
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    60   2e-09
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    60   3e-09
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    60   3e-09
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    60   3e-09
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    57   2e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    57   2e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    57   2e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    57   2e-08
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   1e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   1e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   1e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr...    54   2e-07
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr...    54   2e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   5e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   1e-06
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   1e-06
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   1e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    52   1e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    52   1e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    51   2e-06
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    51   2e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   2e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777...    50   4e-06
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   7e-06
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   7e-06

>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:1510737-1506382 | 20130731
          Length = 799

 Score =  158 bits (399), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 78/84 (92%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLDK ATE DL+KVFS+VGV+TEVRLMMNPQTK+NKGFAFLRFE VEQAK+A+ ELKNP
Sbjct: 219 GGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNP 278

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VINGKQCGV P QDSDTLYLGNIC
Sbjct: 279 VINGKQCGVTPSQDSDTLYLGNIC 302


>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:1510737-1506382 | 20130731
          Length = 799

 Score =  158 bits (399), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 78/84 (92%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLDK ATE DL+KVFS+VGV+TEVRLMMNPQTK+NKGFAFLRFE VEQAK+A+ ELKNP
Sbjct: 219 GGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNP 278

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VINGKQCGV P QDSDTLYLGNIC
Sbjct: 279 VINGKQCGVTPSQDSDTLYLGNIC 302


>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:1510737-1506382 | 20130731
          Length = 800

 Score =  158 bits (399), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 78/84 (92%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLDK ATE DL+KVFS+VGV+TEVRLMMNPQTK+NKGFAFLRFE VEQAK+A+ ELKNP
Sbjct: 220 GGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNP 279

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VINGKQCGV P QDSDTLYLGNIC
Sbjct: 280 VINGKQCGVTPSQDSDTLYLGNIC 303


>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:1510737-1506382 | 20130731
          Length = 800

 Score =  158 bits (399), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 78/84 (92%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLDK ATE DL+KVFS+VGV+TEVRLMMNPQTK+NKGFAFLRFE VEQAK+A+ ELKNP
Sbjct: 220 GGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNP 279

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VINGKQCGV P QDSDTLYLGNIC
Sbjct: 280 VINGKQCGVTPSQDSDTLYLGNIC 303


>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:30979896-30974591 | 20130731
          Length = 782

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 74/86 (86%), Gaps = 2/86 (2%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLDK ATEHDL+KVFSKVG ITEVR+ +NPQTKRNKGFA LRFETVE  K+AL ELKNP
Sbjct: 199 GGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAELKNP 258

Query: 263 VINGKQCG--VAPCQDSDTLYLGNIC 286
           VINGKQCG  +  CQDSDTLYL NIC
Sbjct: 259 VINGKQCGITITTCQDSDTLYLDNIC 284


>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:32212286-32219222 | 20130731
          Length = 941

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLD+  TE DLKK+F ++G + EVRL  N  T +N+G+A +RF   E AKKAL E+KNP
Sbjct: 423 GGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNP 482

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VI GK+CG +P +D+DTL+LGNIC
Sbjct: 483 VIRGKRCGTSPSEDNDTLFLGNIC 506


>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:32212286-32219222 | 20130731
          Length = 941

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLD+  TE DLKK+F ++G + EVRL  N  T +N+G+A +RF   E AKKAL E+KNP
Sbjct: 423 GGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNP 482

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VI GK+CG +P +D+DTL+LGNIC
Sbjct: 483 VIRGKRCGTSPSEDNDTLFLGNIC 506


>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:32212286-32219222 | 20130731
          Length = 989

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGLD+  TE DLKK+F ++G + EVRL  N  T +N+G+A +RF   E AKKAL E+KNP
Sbjct: 423 GGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNP 482

Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
           VI GK+CG +P +D+DTL+LGNIC
Sbjct: 483 VIRGKRCGTSPSEDNDTLFLGNIC 506


>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 354

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+   A   DLK+   ++G + +VR+M       NKGFAF+ +  VE A KA+ EL N 
Sbjct: 115 GGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNT 174

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +  Q  + L++GNI
Sbjct: 175 EFKGRKIKCSTSQAKNRLFIGNI 197


>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+   A   DLK+   ++G + +VR+M       NKGFAF+ +  VE A KA+ EL N 
Sbjct: 115 GGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNT 174

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +  Q  + L++GNI
Sbjct: 175 EFKGRKIKCSTSQAKNRLFIGNI 197


>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+   A   DLK+   ++G + +VR+M       NKGFAF+ +  VE A KA+ EL N 
Sbjct: 115 GGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNT 174

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +  Q  + L++GNI
Sbjct: 175 EFKGRKIKCSTSQAKNRLFIGNI 197


>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+   A   DLK+   ++G + +VR+M       NKGFAF+ +  VE A KA+ EL N 
Sbjct: 115 GGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNT 174

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +  Q  + L++GNI
Sbjct: 175 EFKGRKIKCSTSQAKNRLFIGNI 197


>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+    +E DL+     VG + EVR+M   + K  KG+AF+ F+T E A KAL EL N 
Sbjct: 106 GGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALKELNNS 162

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +P Q    L++G++
Sbjct: 163 EFKGRKIKCSPSQVKHRLFIGSV 185


>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+    +E DL+     VG + EVR+M   + K  KG+AF+ F+T E A KAL EL N 
Sbjct: 106 GGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALKELNNS 162

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +P Q    L++G++
Sbjct: 163 EFKGRKIKCSPSQVKHRLFIGSV 185


>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42488464-42483010 | 20130731
          Length = 477

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+    +E DL+     VG + EVR+M   + K  KG+AF+ F+T E A KAL EL N 
Sbjct: 106 GGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALKELNNS 162

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +P Q    L++G++
Sbjct: 163 EFKGRKIKCSPSQVKHRLFIGSV 185


>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+    +E DL+     VG + EVR+M   + K  KG+AF+ F+T E A KAL EL N 
Sbjct: 106 GGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALKELNNS 162

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              G++   +P Q    L++G++
Sbjct: 163 EFKGRKIKCSPSQVKHRLFIGSV 185


>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr3:7898677-7894080 | 20130731
          Length = 447

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+     E  L   FSK G + + R++M+ ++ R+KGF F+ + TVE+A  A+  L   
Sbjct: 49  GGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQ 108

Query: 263 VINGKQCGV 271
            + G++ GV
Sbjct: 109 DLYGRRVGV 117


>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr3:7898604-7894080 | 20130731
          Length = 447

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+     E  L   FSK G + + R++M+ ++ R+KGF F+ + TVE+A  A+  L   
Sbjct: 49  GGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQ 108

Query: 263 VINGKQCGV 271
            + G++ GV
Sbjct: 109 DLYGRRVGV 117


>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527069-45523373 | 20130731
          Length = 268

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 44/69 (63%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+  +  E+ L++ FS+ G + + R++M+ +T R++GF F+ F +VE+A  A+  L   
Sbjct: 47  GGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQ 106

Query: 263 VINGKQCGV 271
            ++G++  V
Sbjct: 107 DLHGRRVRV 115


>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
           chr7:38601352-38612085 | 20130731
          Length = 709

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%)

Query: 208 AATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVINGK 267
           + TE +L++ FS+ G +++V L+++  TKR+KG AF+ F   E A +AL E  N +  G+
Sbjct: 188 STTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEESNNSIFQGR 247

Query: 268 QCGVAPCQDSD 278
              V P + ++
Sbjct: 248 LLRVIPAKSNE 258


>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
           chr7:38600263-38612243 | 20130731
          Length = 723

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%)

Query: 208 AATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVINGK 267
           + TE +L++ FS+ G +++V L+++  TKR+KG AF+ F   E A +AL E  N +  G+
Sbjct: 202 STTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEESNNSIFQGR 261

Query: 268 QCGVAPCQDSD 278
              V P + ++
Sbjct: 262 LLRVIPAKSNE 272


>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527062-45523373 | 20130731
          Length = 276

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 43/68 (63%)

Query: 204 GLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPV 263
           G+  +  E+ L++ FS+ G + + R++M+ +T R++GF F+ F +VE+A  A+  L    
Sbjct: 56  GVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQD 115

Query: 264 INGKQCGV 271
           ++G++  V
Sbjct: 116 LHGRRVRV 123


>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025533-49031900 | 20130731
          Length = 479

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 50/83 (60%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGL +  ++ D++++   +G I E++L+ + +T  +KG+AF+ ++T E A+KA+ ++ N 
Sbjct: 109 GGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK 168

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              GK       +    L++GNI
Sbjct: 169 EFKGKTLRCLLSETKHRLFIGNI 191


>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025533-49031887 | 20130731
          Length = 479

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 50/83 (60%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGL +  ++ D++++   +G I E++L+ + +T  +KG+AF+ ++T E A+KA+ ++ N 
Sbjct: 109 GGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK 168

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              GK       +    L++GNI
Sbjct: 169 EFKGKTLRCLLSETKHRLFIGNI 191


>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025861-49031887 | 20130731
          Length = 479

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 50/83 (60%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGL +  ++ D++++   +G I E++L+ + +T  +KG+AF+ ++T E A+KA+ ++ N 
Sbjct: 109 GGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNK 168

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
              GK       +    L++GNI
Sbjct: 169 EFKGKTLRCLLSETKHRLFIGNI 191


>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986546-3983001 | 20130731
          Length = 253

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+  +  E  L++ FS+ G + + +++M+  T R++GF F+ F T E+A  AL  + N 
Sbjct: 45  GGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNK 104

Query: 263 VINGKQCGV 271
            ++G+   V
Sbjct: 105 ELDGRTVRV 113


>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986488-3983001 | 20130731
          Length = 253

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+  +  E  L++ FS+ G + + +++M+  T R++GF F+ F T E+A  AL  + N 
Sbjct: 45  GGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNK 104

Query: 263 VINGKQCGV 271
            ++G+   V
Sbjct: 105 ELDGRTVRV 113


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
           chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 205 LDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVI 264
           LD + T+  L ++FS+ G +T  +++ +PQ   ++G  F+ F T E+A +AL E+   ++
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQGI-SRGSGFVAFSTPEEATRALAEMNGKMV 371

Query: 265 NGKQCGVAPCQ 275
            GK   VAP Q
Sbjct: 372 AGKPLYVAPAQ 382


>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr7:2533493-2542856 | 20130731
          Length = 752

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GG+   A   DLK+    +G + +VR+        N+GFAF+ + ++E A KA+ EL N 
Sbjct: 355 GGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKELNNT 414

Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
                +   +  Q    L++GNI
Sbjct: 415 EFKAGKIKCSKSQAKSRLFIGNI 437


>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:37745112-37734961 | 20130731
          Length = 865

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 208 AATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVINGK 267
           + TE +L++ FS+ G +++  L+++  TKR+KG A++ F   E A +AL E  N +  G+
Sbjct: 339 STTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGR 398

Query: 268 QCGVAPC 274
              V P 
Sbjct: 399 LLHVMPA 405


>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
           chr7:37775862-37750453 | 20130731
          Length = 1678

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 205 LDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVI 264
           L  + TE +L++ FS+ G +++V L+++  TKR+KG AF+ F   E A +AL E  N + 
Sbjct: 906 LPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIF 965

Query: 265 NGK 267
            G+
Sbjct: 966 QGR 968


>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42753184 | 20130731
          Length = 493

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGL    TE D KK F + G IT+V +M +  T+R +GF F+ +++ E   + L++  + 
Sbjct: 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHE 170

Query: 263 VINGKQC 269
            +NGK  
Sbjct: 171 -LNGKMV 176


>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42754792 | 20130731
          Length = 479

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
           GGL    TE D KK F + G IT+V +M +  T+R +GF F+ +++ E   + L++  + 
Sbjct: 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHE 170

Query: 263 VINGKQC 269
            +NGK  
Sbjct: 171 -LNGKMV 176