Miyakogusa Predicted Gene

Lj1g3v2883910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2883910.1 Non Characterized Hit- tr|I3T359|I3T359_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3
SV=1,100,0,Cytochrom_C,Cytochrome c, class I; Cytochrome c,Cytochrome
c domain; CYTC,Cytochrome c domain; CYTCH,CUFF.29631.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008460.1 | cytochrome protein C | HC | chr5:1791124-17935...   216   5e-57
Medtr7g080803.1 | cytochrome protein C | HC | chr7:30770907-3077...   212   7e-56
Medtr7g080793.1 | cytochrome protein C | HC | chr7:30767589-3076...   153   3e-38

>Medtr5g008460.1 | cytochrome protein C | HC | chr5:1791124-1793503
           | 20130731
          Length = 113

 Score =  216 bits (549), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/113 (88%), Positives = 109/113 (96%)

Query: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MA+F+ APPGD K+G+KIF+ KCAQCHTVD+GAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFELAPPGDAKSGDKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTAQ 113
           NKNMAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TAQ
Sbjct: 61  NKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATAQ 113


>Medtr7g080803.1 | cytochrome protein C | HC |
           chr7:30770907-30773490 | 20130731
          Length = 114

 Score =  212 bits (539), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 107/113 (94%)

Query: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MA+FDEAPPG+  AGEKIF+ KCAQCHTVD+GAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPAAGEKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTAQ 113
           NKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK +T++
Sbjct: 61  NKNKAVDWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKDATSK 113


>Medtr7g080793.1 | cytochrome protein C | HC |
           chr7:30767589-30769319 | 20130731
          Length = 107

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           M  F+   P +  AGEKIF+  CAQCH+ + GA HKQGPNLNGLFG QSGTTP YSY  A
Sbjct: 1   MELFEPTLPRNRAAGEKIFRSDCAQCHS-NIGAVHKQGPNLNGLFGSQSGTTPEYSYCVA 59

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           NKNM++ WEEK + DYLLNP KYI  TKMVFP LKKPQ+R DLIAYLK
Sbjct: 60  NKNMSMNWEEKIMDDYLLNPNKYILDTKMVFPALKKPQERVDLIAYLK 107