Miyakogusa Predicted Gene
- Lj1g3v2862750.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2862750.2 Non Characterized Hit- tr|D7MKV6|D7MKV6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,22.17,8e-18,mTERF,Mitochodrial transcription termination
factor-related; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NA,CUFF.29614.2
(556 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g080620.1 | transcription termination factor family protei... 801 0.0
Medtr8g005155.1 | transcription termination factor family protei... 604 e-173
Medtr7g093000.1 | transcription termination factor family protei... 157 2e-38
Medtr5g084810.1 | transcription termination factor family protei... 151 2e-36
Medtr8g080990.1 | transcription termination factor family protei... 62 1e-09
Medtr8g081000.1 | transcription termination factor family protei... 52 2e-06
Medtr8g081000.2 | transcription termination factor family protei... 52 2e-06
Medtr8g081000.3 | transcription termination factor family protei... 52 2e-06
Medtr2g061450.1 | transcription termination factor family protei... 50 4e-06
>Medtr7g080620.1 | transcription termination factor family protein |
HC | chr7:30698662-30694614 | 20130731
Length = 737
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/556 (70%), Positives = 465/556 (83%), Gaps = 11/556 (1%)
Query: 8 FFSLYRHFSISTI-----LRKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGNNT 62
FF L+RHFS +T L KIPI+HRN ++EAQKALTDYLH T+S PFTYAE IGNNT
Sbjct: 28 FFFLHRHFSTTTKTNFPNLSKIPIKHRNHVIYEAQKALTDYLHNTKSIPFTYAEHIGNNT 87
Query: 63 LCSLSNLIAKVEFSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFS 122
CSL+NLI+KV FSP TFS + +RV+R+HPINEFEVFFESIGI++ LVS LLP+DK+FFS
Sbjct: 88 FCSLTNLISKVNFSPPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDLLPNDKLFFS 147
Query: 123 QDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGM 182
+DR+L +AAC L DFGFPWEKLGVLY+++SSIFG+S ELK RL K FGFGNVEVIG+
Sbjct: 148 EDRTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRFGFGNVEVIGI 207
Query: 183 CLAFPFVLSEES---QEGV-GIDELFSDLKLIFLDFGLGRFVEGDVDSWHEVCRKLRLFI 238
CLAFPFVLSEE Q+GV GID LFSDLKLIFLD LG +VEG+VDSW+EVCRKLR+F
Sbjct: 208 CLAFPFVLSEEVDQIQKGVFGIDGLFSDLKLIFLDNSLGSYVEGNVDSWYEVCRKLRMFF 267
Query: 239 DLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXXXXXXXX 298
DL G+KGN+ E +G+NK SIF++++E+E+V++V++ CRFG KKEEVA
Sbjct: 268 DLSGWKGNVGELMGKNK--SIFVDHKEDEIVHRVEYLCRFGGKKEEVALLILQCPEVLKL 325
Query: 299 XXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKIN 358
E VINVL+LLKHFG+SSKDL+++ + F HVLG ++VNLPNVMRA+GLQEWF DK+
Sbjct: 326 DLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGLQEWFCDKLK 385
Query: 359 GGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTIDV 418
GGHHQLL DYIA NED+DK YQDGLRRI ISRARVHSI+KL FLH LGFGENALT+++
Sbjct: 386 GGHHQLLADYIASDRNEDRDKVYQDGLRRIHISRARVHSINKLNFLHRLGFGENALTMNL 445
Query: 419 LNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRKVNFFNQEMGTS 478
L+ LHGTSSELQERFDCLL SRIEFSKLCMMVR+TPRILNQN E I++KV FFNQ+MGT+
Sbjct: 446 LDCLHGTSSELQERFDCLLRSRIEFSKLCMMVRKTPRILNQNYEIIEQKVIFFNQKMGTT 505
Query: 479 LSYLETFPAMLHYHLEDRIIPRYRFHKWLTEKGLCCKKYSIRSMIANNEKKFVARVFKIH 538
L YLETFPAMLHYHL+DRIIPRYRFH WLTE+GL +KYS++SMI ++EKKFVARVFKIH
Sbjct: 506 LDYLETFPAMLHYHLDDRIIPRYRFHTWLTERGLSYRKYSVQSMITDSEKKFVARVFKIH 565
Query: 539 PAAPKHWFEKFCHIKL 554
PAAPKHWFE+FC KL
Sbjct: 566 PAAPKHWFEQFCRRKL 581
>Medtr8g005155.1 | transcription termination factor family protein |
HC | chr8:75123-77422 | 20130731
Length = 564
Score = 604 bits (1557), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/558 (53%), Positives = 400/558 (71%), Gaps = 15/558 (2%)
Query: 4 KTLSFFSLYRHF--SISTIL----RKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAEL 57
K + +L RHF +I+T L ++IP R++ L V +AQKALT+YLH+TRS P+ +A+
Sbjct: 2 KVMLLNNLKRHFCSNITTTLNSSKKEIPCRYKKLVVSQAQKALTEYLHSTRSIPYAFADQ 61
Query: 58 IGNNTLCSLSNLIAKV-EFSP---STFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGL 113
I N+ SLSNLI+K+ FSP +F+K ++ LRY+PINEFE FFESIGI H +S L
Sbjct: 62 ISKNSFHSLSNLISKLGSFSPKKLDSFTKKIEKFLRYNPINEFEFFFESIGIHHTHISSL 121
Query: 114 LPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFG 173
LP+DK FF D SL D+AC L +FGFPW+KLGV+Y + +F +S +E+K RL LK +G
Sbjct: 122 LPNDKFFFCDDGSLLDSACVLCEFGFPWDKLGVIYTESGFMFRKSGSEIKGRLCLLKRYG 181
Query: 174 FGNVEVIGMCLAFPFVLSEESQEGVG--IDELFSDLKLIFLDFGLGRFVEGDVDSWHEVC 231
F NV+++ +CL FPFV E +E V +D L SDL+L+FLDF L VEG+VD W++VC
Sbjct: 182 FCNVQIVAICLTFPFVFGVEEREFVDDEVDRLLSDLRLVFLDFDLVGCVEGNVDVWYDVC 241
Query: 232 RKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXX 291
RK+++F DL KG + E IGRNK+ + +EY EEEL+ KV+FFCRF V+KEEVA+
Sbjct: 242 RKIKVFYDLSDGKGKIGELIGRNKH--LILEYGEEELIEKVEFFCRFSVEKEEVARLILQ 299
Query: 292 XXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQE 351
E INVLKLLKH G+ S L ++ + +A+ LG K+ NLPNVMRA+GL+E
Sbjct: 300 GLELLSLNLE-ATINVLKLLKHIGVDSTGLGDVKKNYAYALGTIKMANLPNVMRAMGLRE 358
Query: 352 WFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGE 411
WFFDKI G+H+LL D+I YPNE+ DK YQ G + I +R H++SKL F+H +GFGE
Sbjct: 359 WFFDKIKDGNHKLLVDFITSYPNEEPDKGYQSGFKAIHDARLPSHNMSKLNFMHTIGFGE 418
Query: 412 NALTIDVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRKVNFF 471
NA+T+D+L H+HGTS EL +RFDCLL IEFSKLC ++ + P+IL+QN ET+++K+NF
Sbjct: 419 NAMTMDILTHMHGTSEELHKRFDCLLHLGIEFSKLCKIITKLPKILSQNPETLEKKINFL 478
Query: 472 NQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLTEKGLCCKKYSIRSMIANNEKKFV 531
Q+MG SL L+TFPA + + LE+RI PR+RFH W EKGL K YSI S++A ++K FV
Sbjct: 479 CQDMGHSLELLDTFPAFISFDLENRIKPRFRFHMWALEKGLYSKNYSIASLVATSDKGFV 538
Query: 532 ARVFKIHPAAPKHWFEKF 549
RVFKIHPAAPKHWFE+F
Sbjct: 539 GRVFKIHPAAPKHWFEQF 556
>Medtr7g093000.1 | transcription termination factor family protein |
HC | chr7:36920060-36916504 | 20130731
Length = 571
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 245/536 (45%), Gaps = 40/536 (7%)
Query: 31 LAVHEAQKALTDYLHATRSFPFTYAELIGNNTLCSLSNLIAKVEFSPSTFS--KSFQRVL 88
L + EAQ AL +YLH+TRS F A+ + N+ L NL+ K + ++ + + R L
Sbjct: 47 LTIKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVHKTLKNENSINTKRLISRHL 106
Query: 89 RYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVLY 148
RY+PINEFE FFES+G++ LLP D +F + D L L ++G P K+G ++
Sbjct: 107 RYNPINEFEPFFESLGLKPSEYESLLPRDLIFLNDDPLLMANYHTLCNYGVPRSKMGKIF 166
Query: 149 LQESSIFGRSAAELKSRLGELKGFGFGNVEVIGMCLAFPFVL-SEESQEGVGIDELFSDL 207
Q +F L S++ + G ++ P +L + + E V + E+ L
Sbjct: 167 KQAPQVFKFENGVLVSKIKAYEDLGISASILVNAVAVSPGILVGDVNVEFVKVVEM---L 223
Query: 208 KLIFLDFGLGRFVEGDVD---------SWHEVCRKLRLFIDLIGYKGNLWEYIGRNKYKS 258
K I G G F G + +W + L L D + L E I R+
Sbjct: 224 KNIVAKGGDGDFDSGWIQWHYLDEVSCNWGLMLELLCLLSDTGFSEKQLAEIIHRS--PC 281
Query: 259 IFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXXXXXXXXXXENPVINVLKLLKHFGLSS 318
I E + ++ + F +FG+ ++A + L+LL + +
Sbjct: 282 IVFEESGGKTLSMIGFLVKFGLSVNQIALLFLEFPQILMVKFFANLRVCLQLLTEIEMEA 341
Query: 319 KDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKINGGHHQLLTDYIAKYPNEDQD 378
K++ +I Q + G N L +++ L N G +L + + P+E ++
Sbjct: 342 KEIGKIFQSHTILAGSNTLKTTKSLLGCL----------NVGKRRLCS-ILQDNPHEMKN 390
Query: 379 ------KDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTID-VLNHLHGTSSELQE 431
GLR ++ ++RV K +FL LG+ EN +D G +ELQE
Sbjct: 391 WVLGIRVKPMVGLRDLEEEKSRV---GKTEFLLRLGYVENTKEMDSAFKAFRGKGAELQE 447
Query: 432 RFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRKVNFFNQEMGTSLSYLETFPAMLHY 491
RFD ++ + + ++ M+R +P+ILNQN++ +K K+ + ++ G S+S L FP+ L Y
Sbjct: 448 RFDFIVNAGLTRDEVRRMIRVSPQILNQNTDRVKMKIEYLVKK-GFSVSDLVNFPSYLSY 506
Query: 492 HLEDRIIPRYRFHKWLTEKGLCCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWFE 547
R+ R + WL + G ++ ++IA + F+ K HP+ + W E
Sbjct: 507 K-SPRVKLRLSMYNWLVDHGAVTPGLALSTIIACTDNLFLQSYVKRHPSGLQVWEE 561
>Medtr5g084810.1 | transcription termination factor family protein |
HC | chr5:36606004-36603602 | 20130731
Length = 592
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/562 (24%), Positives = 243/562 (43%), Gaps = 46/562 (8%)
Query: 3 SKTLSFFSLYRHFSISTILRKI--PIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGN 60
S ++SF + + S ST + + PI + +AQ+AL +YLH T+++ F+ AE I
Sbjct: 41 SSSISFKNSILNCSKSTQIPALSPPIYIKRATKIQAQRALFEYLHYTQNYTFSDAEFISK 100
Query: 61 NTLCSLSNLIAKVEF-SPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKV 119
N+ + LI+K+ ++ R L YHPINEFE F ES+GI H + LP
Sbjct: 101 NSPHFIDFLISKINIPDDGDVFRALSRYLMYHPINEFEPFLESLGINHTKLEKFLPKGCY 160
Query: 120 FFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEV 179
F D L D L G P ++ +Y + IFG L+ + + G +
Sbjct: 161 FLCDDSVLVDNFHVLCYHGVPRNRMAKIYTEAREIFGYGNGVLEKKFQAYEDLGLSKSSL 220
Query: 180 IGMCLAFP----------FVLSEESQEGVGID-ELFSDLKLIFLDFGLGRFVEGDVDSWH 228
I + + P FV+ + + +GI+ + F + + R +E ++ +H
Sbjct: 221 IKLFVCCPLLLVGDVDSEFVVVLDWLKRIGIESKWFVNCMSSSNTYSWKRMIET-LEFFH 279
Query: 229 EVCRKLRLFIDLIGYKGN-LWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQ 287
+V + DL N L E +GR Y +F+ F + GV V
Sbjct: 280 QVGYSEKHMYDLFKVDPNLLLEGLGRKLY--LFLGR-----------FIKSGVDVNVVCS 326
Query: 288 XXXXXXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRAL 347
+++V+ L + + D+ + + H+L ++ + V L
Sbjct: 327 CFIEHSDMLSSKRVENLMSVISFLYNIRMEQDDIAHVLSNYMHILSKHSIKGYRAVCMEL 386
Query: 348 GLQEWFFDK-INGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHG 406
G+ + + IN +L++ + + Y L +++ K FL
Sbjct: 387 GVPKADLCRIINDDPLELISLACKQKHKRSGGQSYCVPLSKLE----------KTAFLLK 436
Query: 407 LGFGENALTI-DVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIK 465
LG+ EN+ + + + G +LQER DCL+ + ++ S MV+R P+IL I+
Sbjct: 437 LGYIENSEEMEEAVKLFPGRGDQLQERLDCLVEAGLDCSTAIRMVKRVPKILVLKRNVIQ 496
Query: 466 RKVNFFNQEMGTSLSYLETFPAMLHYHLE--DRIIPRYRFHKWLTEKGLCCKKYSIRSMI 523
+K++F +G + L +P Y L+ DR+ R ++WL E+ S+ +++
Sbjct: 497 KKIDFLKNTLGYPIECLVRYPT---YFLQDVDRMSARVSMYEWLKERNAVSHALSLSTIV 553
Query: 524 ANNEKKFVARVFKIHPAAPKHW 545
+ +EK+FV +HP P W
Sbjct: 554 SYDEKRFVQVFVNMHPEGPTIW 575
>Medtr8g080990.1 | transcription termination factor family protein |
LC | chr8:34980913-34978858 | 20130731
Length = 378
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 407 LGFGENA-LTIDVLNHLHGTSSE-LQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETI 464
LGF +N+ + + L +HG S++ + + D + C + M ++ P +L + + +
Sbjct: 227 LGFPQNSRMLVHALFTIHGLSNKTFRRKLDLIQCFGFSKDESLQMFKKAPYLLKASEKKL 286
Query: 465 KRKVNFFNQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLTEKGLCCKKYSIRSMIA 524
K + FF + S L + P +L Y +EDR+ PRYR + L + LC + S +M+
Sbjct: 287 KVGIEFFLNTVMLPKSVLVSQPMVLMYSMEDRVFPRYRVFQLLKSQNLCKEVPSFVTMLW 346
Query: 525 NNEKKFVAR 533
+E KF+ R
Sbjct: 347 LSEDKFLDR 355
>Medtr8g081000.1 | transcription termination factor family protein |
LC | chr8:34984986-34983259 | 20130731
Length = 391
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 449 MVRRTPRILNQNSETIKRKVNFFNQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLT 508
M + P +L + + +K + FF + S L + PA+L Y +EDR+ PR+R ++ L
Sbjct: 284 MFKHVPALLRSSEKKLKVGIEFFLHTVMLPKSTLVSQPAILMYSMEDRVFPRFRVYQLLK 343
Query: 509 EKGLCCKKYSIRSMIANNEKKFVAR 533
+ LC K S ++++ +E F+ R
Sbjct: 344 SQNLCQKLPSFVTVLSFSEDMFLDR 368
>Medtr8g081000.2 | transcription termination factor family protein |
LC | chr8:34984986-34982125 | 20130731
Length = 400
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 449 MVRRTPRILNQNSETIKRKVNFFNQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLT 508
M + P +L + + +K + FF + S L + PA+L Y +EDR+ PR+R ++ L
Sbjct: 284 MFKHVPALLRSSEKKLKVGIEFFLHTVMLPKSTLVSQPAILMYSMEDRVFPRFRVYQLLK 343
Query: 509 EKGLCCKKYSIRSMIANNEKKFVAR 533
+ LC K S ++++ +E F+ R
Sbjct: 344 SQNLCQKLPSFVTVLSFSEDMFLDR 368
>Medtr8g081000.3 | transcription termination factor family protein |
LC | chr8:34984986-34982260 | 20130731
Length = 410
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 449 MVRRTPRILNQNSETIKRKVNFFNQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLT 508
M + P +L + + +K + FF + S L + PA+L Y +EDR+ PR+R ++ L
Sbjct: 284 MFKHVPALLRSSEKKLKVGIEFFLHTVMLPKSTLVSQPAILMYSMEDRVFPRFRVYQLLK 343
Query: 509 EKGLCCKKYSIRSMIANNEKKFVAR 533
+ LC K S ++++ +E F+ R
Sbjct: 344 SQNLCQKLPSFVTVLSFSEDMFLDR 368
>Medtr2g061450.1 | transcription termination factor family protein |
HC | chr2:26047796-26046155 | 20130731
Length = 432
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 25/257 (9%)
Query: 308 LKLLKHFGLSSKDLDEISQKF--AHVLGRNKLVNLPNVMRALGLQEWFFDKINGGHHQLL 365
+++ + G S L + ++F A V+G ++V + N + + + D++ ++L
Sbjct: 138 IEIFRGLGFSDDVLIRVLEEFPSAVVMGETQIVGVINFLMEFRVPKDEIDRVVRLFPKVL 197
Query: 366 TDYIAKYPNEDQDKDYQDGLRRIQISRARVHS-ISKLKFLHGLGFGENALTIDVLNHLHG 424
I ED+ K LR + S V + + + + G+ GE + + +L L
Sbjct: 198 GFSI-----EDRLKPLIHELRGLGFSSREVRAEVVRDPRILGMEIGEFSRCLKLLQSLKC 252
Query: 425 TSS---------------ELQERFDCLLCSRIEFSKLCMMVR-RTPRILNQNSETIKRKV 468
+ E++ R DCL C R + + V + PR++ + E I++K+
Sbjct: 253 REAIKERIFGEGLVRACFEVKLRVDCL-CGRGLIRRDALKVLWKEPRLIAYDLEDIEKKI 311
Query: 469 NFFNQEMGTSLSYLETFPAMLHYHLEDRIIPRYRFHKWLTEKGLCCKKYSIRSMIANNEK 528
F Q M + L P L + E +I+PRY ++L KG + ++ +I
Sbjct: 312 EFLIQRMKYGVDCLHEVPEYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRL 371
Query: 529 KFVARVFKIHPAAPKHW 545
+F K +P K +
Sbjct: 372 RFYNLYVKPYPECEKIY 388