Miyakogusa Predicted Gene

Lj1g3v2862750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2862750.1 tr|Q9FG25|Q9FG25_ARATH Mitochondrial
transcription termination factor family protein OS=Arabidopsis
,23.23,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
mTERF,Mitochodrial transcription termination factor,CUFF.29614.1
         (471 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080620.1 | transcription termination factor family protei...   651   0.0  
Medtr8g005155.1 | transcription termination factor family protei...   494   e-140
Medtr7g093000.1 | transcription termination factor family protei...   125   1e-28
Medtr5g084810.1 | transcription termination factor family protei...   112   6e-25

>Medtr7g080620.1 | transcription termination factor family protein |
           HC | chr7:30698662-30694614 | 20130731
          Length = 737

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/469 (69%), Positives = 386/469 (82%), Gaps = 11/469 (2%)

Query: 8   FFSLYRHFSISTI-----LRKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGNNT 62
           FF L+RHFS +T      L KIPI+HRN  ++EAQKALTDYLH T+S PFTYAE IGNNT
Sbjct: 28  FFFLHRHFSTTTKTNFPNLSKIPIKHRNHVIYEAQKALTDYLHNTKSIPFTYAEHIGNNT 87

Query: 63  LCSLSNLIAKVEFSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFS 122
            CSL+NLI+KV FSP TFS + +RV+R+HPINEFEVFFESIGI++ LVS LLP+DK+FFS
Sbjct: 88  FCSLTNLISKVNFSPPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDLLPNDKLFFS 147

Query: 123 QDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGM 182
           +DR+L +AAC L DFGFPWEKLGVLY+++SSIFG+S  ELK RL   K FGFGNVEVIG+
Sbjct: 148 EDRTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRFGFGNVEVIGI 207

Query: 183 CLAFPFVLSEES---QEGV-GIDELFSDLKLIFLDFGLGRFVEGDVDSWHEVCRKLRLFI 238
           CLAFPFVLSEE    Q+GV GID LFSDLKLIFLD  LG +VEG+VDSW+EVCRKLR+F 
Sbjct: 208 CLAFPFVLSEEVDQIQKGVFGIDGLFSDLKLIFLDNSLGSYVEGNVDSWYEVCRKLRMFF 267

Query: 239 DLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXXXXXXXX 298
           DL G+KGN+ E +G+N  KSIF++++E+E+V++V++ CRFG KKEEVA            
Sbjct: 268 DLSGWKGNVGELMGKN--KSIFVDHKEDEIVHRVEYLCRFGGKKEEVALLILQCPEVLKL 325

Query: 299 XXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKIN 358
             E  VINVL+LLKHFG+SSKDL+++ + F HVLG  ++VNLPNVMRA+GLQEWF DK+ 
Sbjct: 326 DLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGLQEWFCDKLK 385

Query: 359 GGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTIDV 418
           GGHHQLL DYIA   NED+DK YQDGLRRI ISRARVHSI+KL FLH LGFGENALT+++
Sbjct: 386 GGHHQLLADYIASDRNEDRDKVYQDGLRRIHISRARVHSINKLNFLHRLGFGENALTMNL 445

Query: 419 LNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
           L+ LHGTSSELQERFDCLL SRIEFSKLCMMVR+TPRILNQN E I++K
Sbjct: 446 LDCLHGTSSELQERFDCLLRSRIEFSKLCMMVRKTPRILNQNYEIIEQK 494


>Medtr8g005155.1 | transcription termination factor family protein |
           HC | chr8:75123-77422 | 20130731
          Length = 564

 Score =  494 bits (1271), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/476 (52%), Positives = 337/476 (70%), Gaps = 15/476 (3%)

Query: 4   KTLSFFSLYRHF--SISTIL----RKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAEL 57
           K +   +L RHF  +I+T L    ++IP R++ L V +AQKALT+YLH+TRS P+ +A+ 
Sbjct: 2   KVMLLNNLKRHFCSNITTTLNSSKKEIPCRYKKLVVSQAQKALTEYLHSTRSIPYAFADQ 61

Query: 58  IGNNTLCSLSNLIAKV-EFSP---STFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGL 113
           I  N+  SLSNLI+K+  FSP    +F+K  ++ LRY+PINEFE FFESIGI H  +S L
Sbjct: 62  ISKNSFHSLSNLISKLGSFSPKKLDSFTKKIEKFLRYNPINEFEFFFESIGIHHTHISSL 121

Query: 114 LPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFG 173
           LP+DK FF  D SL D+AC L +FGFPW+KLGV+Y +   +F +S +E+K RL  LK +G
Sbjct: 122 LPNDKFFFCDDGSLLDSACVLCEFGFPWDKLGVIYTESGFMFRKSGSEIKGRLCLLKRYG 181

Query: 174 FGNVEVIGMCLAFPFVLSEESQEGVG--IDELFSDLKLIFLDFGLGRFVEGDVDSWHEVC 231
           F NV+++ +CL FPFV   E +E V   +D L SDL+L+FLDF L   VEG+VD W++VC
Sbjct: 182 FCNVQIVAICLTFPFVFGVEEREFVDDEVDRLLSDLRLVFLDFDLVGCVEGNVDVWYDVC 241

Query: 232 RKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXX 291
           RK+++F DL   KG + E IGRNK+  + +EY EEEL+ KV+FFCRF V+KEEVA+    
Sbjct: 242 RKIKVFYDLSDGKGKIGELIGRNKH--LILEYGEEELIEKVEFFCRFSVEKEEVARLILQ 299

Query: 292 XXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQE 351
                    E   INVLKLLKH G+ S  L ++ + +A+ LG  K+ NLPNVMRA+GL+E
Sbjct: 300 GLELLSLNLE-ATINVLKLLKHIGVDSTGLGDVKKNYAYALGTIKMANLPNVMRAMGLRE 358

Query: 352 WFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGE 411
           WFFDKI  G+H+LL D+I  YPNE+ DK YQ G + I  +R   H++SKL F+H +GFGE
Sbjct: 359 WFFDKIKDGNHKLLVDFITSYPNEEPDKGYQSGFKAIHDARLPSHNMSKLNFMHTIGFGE 418

Query: 412 NALTIDVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
           NA+T+D+L H+HGTS EL +RFDCLL   IEFSKLC ++ + P+IL+QN ET+++K
Sbjct: 419 NAMTMDILTHMHGTSEELHKRFDCLLHLGIEFSKLCKIITKLPKILSQNPETLEKK 474


>Medtr7g093000.1 | transcription termination factor family protein |
           HC | chr7:36920060-36916504 | 20130731
          Length = 571

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 207/457 (45%), Gaps = 40/457 (8%)

Query: 31  LAVHEAQKALTDYLHATRSFPFTYAELIGNNTLCSLSNLIAKV---EFSPSTFSKSFQRV 87
           L + EAQ AL +YLH+TRS  F  A+ +  N+   L NL+ K    E S +T  +   R 
Sbjct: 47  LTIKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVHKTLKNENSINT-KRLISRH 105

Query: 88  LRYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVL 147
           LRY+PINEFE FFES+G++      LLP D +F + D  L      L ++G P  K+G +
Sbjct: 106 LRYNPINEFEPFFESLGLKPSEYESLLPRDLIFLNDDPLLMANYHTLCNYGVPRSKMGKI 165

Query: 148 YLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGMCLAFPFVL-SEESQEGVGIDELFSD 206
           + Q   +F      L S++   +  G     ++      P +L  + + E V + E+   
Sbjct: 166 FKQAPQVFKFENGVLVSKIKAYEDLGISASILVNAVAVSPGILVGDVNVEFVKVVEM--- 222

Query: 207 LKLIFLDFGLGRFVEGDVD---------SWHEVCRKLRLFIDLIGYKGNLWEYIGRNKYK 257
           LK I    G G F  G +          +W  +   L L  D    +  L E I R+   
Sbjct: 223 LKNIVAKGGDGDFDSGWIQWHYLDEVSCNWGLMLELLCLLSDTGFSEKQLAEIIHRS--P 280

Query: 258 SIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXXXXXXXXXXENPVINVLKLLKHFGLS 317
            I  E    + ++ + F  +FG+   ++A                 +   L+LL    + 
Sbjct: 281 CIVFEESGGKTLSMIGFLVKFGLSVNQIALLFLEFPQILMVKFFANLRVCLQLLTEIEME 340

Query: 318 SKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKINGGHHQLLTDYIAKYPNEDQ 377
           +K++ +I Q    + G N L    +++  L          N G  +L +  +   P+E +
Sbjct: 341 AKEIGKIFQSHTILAGSNTLKTTKSLLGCL----------NVGKRRLCS-ILQDNPHEMK 389

Query: 378 D------KDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTID-VLNHLHGTSSELQ 430
           +           GLR ++  ++RV    K +FL  LG+ EN   +D       G  +ELQ
Sbjct: 390 NWVLGIRVKPMVGLRDLEEEKSRV---GKTEFLLRLGYVENTKEMDSAFKAFRGKGAELQ 446

Query: 431 ERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
           ERFD ++ + +   ++  M+R +P+ILNQN++ +K K
Sbjct: 447 ERFDFIVNAGLTRDEVRRMIRVSPQILNQNTDRVKMK 483


>Medtr5g084810.1 | transcription termination factor family protein |
           HC | chr5:36606004-36603602 | 20130731
          Length = 592

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 204/482 (42%), Gaps = 41/482 (8%)

Query: 3   SKTLSFFSLYRHFSISTILRKI--PIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGN 60
           S ++SF +   + S ST +  +  PI  +     +AQ+AL +YLH T+++ F+ AE I  
Sbjct: 41  SSSISFKNSILNCSKSTQIPALSPPIYIKRATKIQAQRALFEYLHYTQNYTFSDAEFISK 100

Query: 61  NTLCSLSNLIAKVEFSPS-TFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKV 119
           N+   +  LI+K+         ++  R L YHPINEFE F ES+GI H  +   LP    
Sbjct: 101 NSPHFIDFLISKINIPDDGDVFRALSRYLMYHPINEFEPFLESLGINHTKLEKFLPKGCY 160

Query: 120 FFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEV 179
           F   D  L D    L   G P  ++  +Y +   IFG     L+ +    +  G     +
Sbjct: 161 FLCDDSVLVDNFHVLCYHGVPRNRMAKIYTEAREIFGYGNGVLEKKFQAYEDLGLSKSSL 220

Query: 180 IGMCLAFP----------FVLSEESQEGVGID-ELFSDLKLIFLDFGLGRFVEGDVDSWH 228
           I + +  P          FV+  +  + +GI+ + F +       +   R +E  ++ +H
Sbjct: 221 IKLFVCCPLLLVGDVDSEFVVVLDWLKRIGIESKWFVNCMSSSNTYSWKRMIET-LEFFH 279

Query: 229 EVCRKLRLFIDLIGYKGN-LWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQ 287
           +V    +   DL     N L E +GR  Y  +F+             F + GV    V  
Sbjct: 280 QVGYSEKHMYDLFKVDPNLLLEGLGRKLY--LFLGR-----------FIKSGVDVNVVCS 326

Query: 288 XXXXXXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRAL 347
                           +++V+  L +  +   D+  +   + H+L ++ +     V   L
Sbjct: 327 CFIEHSDMLSSKRVENLMSVISFLYNIRMEQDDIAHVLSNYMHILSKHSIKGYRAVCMEL 386

Query: 348 GLQEWFFDK-INGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHG 406
           G+ +    + IN    +L++    +       + Y   L +++          K  FL  
Sbjct: 387 GVPKADLCRIINDDPLELISLACKQKHKRSGGQSYCVPLSKLE----------KTAFLLK 436

Query: 407 LGFGENALTI-DVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIK 465
           LG+ EN+  + + +    G   +LQER DCL+ + ++ S    MV+R P+IL      I+
Sbjct: 437 LGYIENSEEMEEAVKLFPGRGDQLQERLDCLVEAGLDCSTAIRMVKRVPKILVLKRNVIQ 496

Query: 466 RK 467
           +K
Sbjct: 497 KK 498