Miyakogusa Predicted Gene

Lj1g3v2840270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2840270.1 tr|I4I0E1|I4I0E1_MICAE Peptide chain release
factor 2 OS=Microcystis aeruginosa PCC 9808 GN=prfB
PE=,51.43,4e-19,seg,NULL; coiled-coil,NULL; PCRF,Peptide chain release
factor; PEPTIDE CHAIN RELEASE FACTOR 2,Peptid,CUFF.29595.1
         (238 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080430.1 | peptide chain release factor 2 | HC | chr7:305...   256   1e-68
Medtr1g041890.1 | peptide chain release factor, putative | HC | ...    63   3e-10

>Medtr7g080430.1 | peptide chain release factor 2 | HC |
           chr7:30593686-30589146 | 20130731
          Length = 475

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 171/239 (71%), Gaps = 17/239 (7%)

Query: 3   VVTQPLCTTTTAAIVTAKSFR-RKQPLLIPQNPTYPSK------HFPF---RTTLXXXXX 52
           VV+ PLC   T   VTAK+FR  KQP LIPQ P+  S       HFPF   RTT      
Sbjct: 4   VVSHPLCCYYTTT-VTAKTFRSYKQPFLIPQFPSSSSSSSSSSPHFPFLSFRTTTLSHRP 62

Query: 53  X---XXXXXXXXXXENQLS-VGEGE-DTDTTEWALQAFYSLRKDVEITSQRVEEIRESSG 107
                         ENQLS VGEGE DT T++ ALQ FYSLRKDVEI SQRV+EIRESSG
Sbjct: 63  SPFPLSPVVLFATPENQLSSVGEGEEDTHTSDSALQDFYSLRKDVEIASQRVKEIRESSG 122

Query: 108 IXXXXXXXXXXXXKASATSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKL 167
           +            +AS +SFWD+RAKAQ+TLSTL+DVK+KI LL ++KTQVEDAETIV L
Sbjct: 123 LQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVML 182

Query: 168 TEEMESSIDRALLEEATSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQ 226
           TEEME S+D+ L EEA+SLIKELNKS+DRFELTQLLSGPYDKEGAVISITAGAGGTDAQ
Sbjct: 183 TEEME-SVDKGLYEEASSLIKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQ 240


>Medtr1g041890.1 | peptide chain release factor, putative | HC |
           chr1:20209058-20203032 | 20130731
          Length = 548

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 84  AFYSLRKDVEITSQRVEEIRESSGIXXXXXXXXXXXXKASATSFWDNRAKAQETLSTLSD 143
             +SLR+ +E T  R E +  SS +                +  WD+  K+ + L  L++
Sbjct: 189 GLFSLRRKIEDTVIRAE-LYASSALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLAN 247

Query: 144 VKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEATSLIKELNKSLDRFELTQLL 203
               ++ L + + +VE+A+ I +L E   ++ID  L ++A     +++  LD++E+++LL
Sbjct: 248 SAKVVDSLKDLRYKVEEAKLIKQLAEM--NAIDYGLYKQAYDASVDVSNILDQYEISKLL 305

Query: 204 SGPYDKEGAVISITAGAG 221
            GP+D  GA + I A  G
Sbjct: 306 KGPFDMAGACLVIKAATG 323