Miyakogusa Predicted Gene

Lj1g3v2839210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2839210.2 Non Characterized Hit- tr|C0HG02|C0HG02_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,58.9,9e-19,PROKAR_LIPOPROTEIN,NULL; seg,NULL,CUFF.29603.2
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080350.1 | ER membrane protein complex subunit-like prote...   335   2e-92
Medtr3g103380.1 | ER membrane protein complex subunit-like prote...   150   1e-36

>Medtr7g080350.1 | ER membrane protein complex subunit-like protein,
           putative | HC | chr7:30552588-30558237 | 20130731
          Length = 299

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 154/176 (87%), Positives = 169/176 (96%)

Query: 69  KIQFILQHAFGDSDFTDAGNFSARLKTWSHGAQTLTKLRFTRDTFTDVEKNKFQELLQGD 128
           KIQF L+HAFGDSDF++AGNFSARLKTWSHGAQTLTKLRF+RD FT+ EKNKFQELL+ D
Sbjct: 73  KIQFTLEHAFGDSDFSEAGNFSARLKTWSHGAQTLTKLRFSRDAFTEDEKNKFQELLKRD 132

Query: 129 DFYKIRLPSNVLSPPGRDYIVSSVKARCLPGDGLEEHFVIHTEGVNILAVNYGAHGACPY 188
           DFY+IRLPSNVLSPPGRDYIVSSVKARCLPGDGLEEHFVIHTEGVNILAVNYGA GACP+
Sbjct: 133 DFYRIRLPSNVLSPPGRDYIVSSVKARCLPGDGLEEHFVIHTEGVNILAVNYGAPGACPF 192

Query: 189 PRQLKLPAKWSFKSHTVLKNSEQAPRTPIFAEEVLGGEGIDGETIKPIERSFWAKY 244
           PRQLKLPAKWSFKSHT+LKN+EQAPRTPIF EE++GGEGI+GE ++PIERSFWAKY
Sbjct: 193 PRQLKLPAKWSFKSHTLLKNTEQAPRTPIFTEELIGGEGIEGELVQPIERSFWAKY 248


>Medtr3g103380.1 | ER membrane protein complex subunit-like protein
           | HC | chr3:47702062-47702355 | 20130731
          Length = 97

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 80/89 (89%), Gaps = 1/89 (1%)

Query: 110 RDTFTDVEKNKFQELLQGDDFYKIRLPSNVLSPPGRDYIVSSVKARCLPGDGLEEHFVIH 169
           RD FTD +KNKFQELL+G+ FY+IR+PSNVL+P G+ YIVSSVKA+CLPG GLEEHFVIH
Sbjct: 2   RDFFTDDDKNKFQELLKGNAFYRIRVPSNVLNPTGKQYIVSSVKAQCLPGHGLEEHFVIH 61

Query: 170 TEGVNILAVNYGA-HGACPYPRQLKLPAK 197
            EGVNILAVNYGA HGACP PRQLKLPAK
Sbjct: 62  MEGVNILAVNYGAPHGACPNPRQLKLPAK 90