Miyakogusa Predicted Gene

Lj1g3v2838160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2838160.1 Non Characterized Hit- tr|D8TQZ1|D8TQZ1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,52.05,4e-17,FAMILY NOT NAMED,NULL;
PspA_IM30,PspA/IM30,CUFF.29584.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g068210.3 | membrane-associated 30 kDa protein | HC | chr4...   137   4e-33
Medtr4g068210.1 | membrane-associated 30 kDa protein | HC | chr4...   137   4e-33
Medtr4g068210.2 | membrane-associated 30 kDa protein | HC | chr4...   104   4e-23

>Medtr4g068210.3 | membrane-associated 30 kDa protein | HC |
           chr4:25570695-25576398 | 20130731
          Length = 319

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 84/115 (73%), Gaps = 7/115 (6%)

Query: 25  HPPFKSSFLHYGGRALEVPGIRVSYSN-RLKCQCHGGGGLGAHMNIFSRFARVIKSYANA 83
             P  +SF  +G R    P   V +   R+     GGG +GA MN+F RF RV+KSYANA
Sbjct: 26  RKPLATSF--FGTR----PANTVKFRGMRIAKPVRGGGAIGAGMNLFERFTRVVKSYANA 79

Query: 84  IISSFEDPEKILEQAVLDMNNDLVKVRQATAQVLASQKQLESKYTAIQKASDDWY 138
           I+SSFEDPEKILEQAVL+MN+DL K+RQATAQVLASQK++E+KY A  +AS++WY
Sbjct: 80  IVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEEWY 134


>Medtr4g068210.1 | membrane-associated 30 kDa protein | HC |
           chr4:25570695-25576398 | 20130731
          Length = 319

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 84/115 (73%), Gaps = 7/115 (6%)

Query: 25  HPPFKSSFLHYGGRALEVPGIRVSYSN-RLKCQCHGGGGLGAHMNIFSRFARVIKSYANA 83
             P  +SF  +G R    P   V +   R+     GGG +GA MN+F RF RV+KSYANA
Sbjct: 26  RKPLATSF--FGTR----PANTVKFRGMRIAKPVRGGGAIGAGMNLFERFTRVVKSYANA 79

Query: 84  IISSFEDPEKILEQAVLDMNNDLVKVRQATAQVLASQKQLESKYTAIQKASDDWY 138
           I+SSFEDPEKILEQAVL+MN+DL K+RQATAQVLASQK++E+KY A  +AS++WY
Sbjct: 80  IVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEEWY 134


>Medtr4g068210.2 | membrane-associated 30 kDa protein | HC |
           chr4:25571077-25576398 | 20130731
          Length = 247

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 58/62 (93%)

Query: 77  IKSYANAIISSFEDPEKILEQAVLDMNNDLVKVRQATAQVLASQKQLESKYTAIQKASDD 136
           ++SYANAI+SSFEDPEKILEQAVL+MN+DL K+RQATAQVLASQK++E+KY A  +AS++
Sbjct: 1   MQSYANAIVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEE 60

Query: 137 WY 138
           WY
Sbjct: 61  WY 62