Miyakogusa Predicted Gene

Lj1g3v2835980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2835980.1 Non Characterized Hit- tr|I1N3Z5|I1N3Z5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49977
PE,82.87,0,eubact_ribD: riboflavin biosynthesis protein
RibD,Riboflavin biosynthesis protein RibD; ribD_Cterm: ,CUFF.29568.1
         (590 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080117.1 | riboflavin biosynthesis protein RibD | HC | ch...  1009   0.0  
Medtr7g080117.2 | riboflavin biosynthesis protein RibD | HC | ch...   882   0.0  
Medtr4g119220.1 | riboflavin biosynthesis protein RibD | HC | ch...   112   1e-24

>Medtr7g080117.1 | riboflavin biosynthesis protein RibD | HC |
           chr7:30448458-30456962 | 20130731
          Length = 596

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/575 (83%), Positives = 528/575 (91%), Gaps = 4/575 (0%)

Query: 6   CFTPIIAKPP-SSIICKC--TKPSTNHALDAAYIKRAALIADKSAGFTAPHPNFGCVIAT 62
           C TPI      SSIICKC  +  + NHALDA YI+RAALIADKSAGFT+PHPNFGCVIAT
Sbjct: 3   CLTPIANTFSFSSIICKCKASNDTHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIAT 62

Query: 63  PSGDVAGEGYLYAEGTTPAEVQAVTAAGERCRGATAYLNMEPGDCHADSAAVSALLQGGV 122
           PSGDVAGEGYLYA+GT+PAEVQAVT+AGERCRGATAYLNMEPGDC  D+ AVSALLQGGV
Sbjct: 63  PSGDVAGEGYLYAQGTSPAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVSALLQGGV 122

Query: 123 KRVVIGMRHPLQHHRGNAVRALRGEGLQVDLLGEDLTSKLVEDAQKECLLVNAPLICRAT 182
           KRVVIGMRHPLQH RGNAVRALR +GLQVDLLGEDLTSK++EDAQKECLLVNAPLICRA+
Sbjct: 123 KRVVIGMRHPLQHFRGNAVRALRSQGLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRAS 182

Query: 183 SRIPFSVLKYAMTLDGKIAASSGHASWISSKESRNLVFDLRGRSDAVIVGGNTVRKDNPR 242
           SR+PFSVLKYAMTLDGKIAAS+GHA WIS K+SRNLVF+LR RSDA+IVGGNTVR+DNPR
Sbjct: 183 SRVPFSVLKYAMTLDGKIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPR 242

Query: 243 LTVRHGGGRMPVRIVMSQTLNLPDEAHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVV 302
           LT RHGGG MP+RIVMSQ+L+LP+EA+LWD SEVST+VVTQRGARRS QKLLASKGVEVV
Sbjct: 243 LTARHGGGHMPIRIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVV 302

Query: 303 EFDMLNSQDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFIAPKIIGGKNAPSP 362
           EFD+LN +DVMEYF+DRGYLS+ WECGGTLAASAISSGVIHKV+AF+APKIIGGKNAPSP
Sbjct: 303 EFDILNPRDVMEYFYDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSP 362

Query: 363 VGELGMVEMSQALNLIDVRYEQVGPDMLVSGFLQPLPDMVPVIPSLEETFVVDPTISRYE 422
           VG+LGMVEMSQA+NLIDV Y+QVGPDMLVSGFLQPLPD  P IPS EETF+ DP++S YE
Sbjct: 363 VGDLGMVEMSQAINLIDVCYQQVGPDMLVSGFLQPLPDTAPTIPSPEETFIADPSVSPYE 422

Query: 423 SSIIFFYKTWDPYGAFSNFSPHAIQMPDENGDYVTWSSVEHFYQAHKFVGADDACA-DCV 481
           SSIIFFYKTWDP+GA SNFSPH IQMPDENG+ VTW SVEH+YQAHKFVG DDA A DC+
Sbjct: 423 SSIIFFYKTWDPHGALSNFSPHPIQMPDENGENVTWLSVEHYYQAHKFVGVDDATAKDCL 482

Query: 482 ERIKSAKSPEEAAKIGRSMQRKRPDLVRPGWDNMKIDVMYRALKCKFSMYPHLKSMLLAT 541
           E+IKS KSPEEAA+IGRS+QR+RPDL+RP WDNMKIDVMY ALKCKFS YPHL SMLL+T
Sbjct: 483 EKIKSVKSPEEAARIGRSIQRQRPDLIRPDWDNMKIDVMYSALKCKFSTYPHLSSMLLST 542

Query: 542 AGCVLVEASPHDLFWGGGRQGDGLNYLGQLLMKLR 576
           AG VLVEASPHDLFWGGGR+G+GLNYLG+LLMKLR
Sbjct: 543 AGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLR 577


>Medtr7g080117.2 | riboflavin biosynthesis protein RibD | HC |
           chr7:30448458-30452495 | 20130731
          Length = 509

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/507 (83%), Positives = 465/507 (91%), Gaps = 4/507 (0%)

Query: 6   CFTPIIAKPP-SSIICKC--TKPSTNHALDAAYIKRAALIADKSAGFTAPHPNFGCVIAT 62
           C TPI      SSIICKC  +  + NHALDA YI+RAALIADKSAGFT+PHPNFGCVIAT
Sbjct: 3   CLTPIANTFSFSSIICKCKASNDTHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIAT 62

Query: 63  PSGDVAGEGYLYAEGTTPAEVQAVTAAGERCRGATAYLNMEPGDCHADSAAVSALLQGGV 122
           PSGDVAGEGYLYA+GT+PAEVQAVT+AGERCRGATAYLNMEPGDC  D+ AVSALLQGGV
Sbjct: 63  PSGDVAGEGYLYAQGTSPAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVSALLQGGV 122

Query: 123 KRVVIGMRHPLQHHRGNAVRALRGEGLQVDLLGEDLTSKLVEDAQKECLLVNAPLICRAT 182
           KRVVIGMRHPLQH RGNAVRALR +GLQVDLLGEDLTSK++EDAQKECLLVNAPLICRA+
Sbjct: 123 KRVVIGMRHPLQHFRGNAVRALRSQGLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRAS 182

Query: 183 SRIPFSVLKYAMTLDGKIAASSGHASWISSKESRNLVFDLRGRSDAVIVGGNTVRKDNPR 242
           SR+PFSVLKYAMTLDGKIAAS+GHA WIS K+SRNLVF+LR RSDA+IVGGNTVR+DNPR
Sbjct: 183 SRVPFSVLKYAMTLDGKIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPR 242

Query: 243 LTVRHGGGRMPVRIVMSQTLNLPDEAHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVV 302
           LT RHGGG MP+RIVMSQ+L+LP+EA+LWD SEVST+VVTQRGARRS QKLLASKGVEVV
Sbjct: 243 LTARHGGGHMPIRIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVV 302

Query: 303 EFDMLNSQDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFIAPKIIGGKNAPSP 362
           EFD+LN +DVMEYF+DRGYLS+ WECGGTLAASAISSGVIHKV+AF+APKIIGGKNAPSP
Sbjct: 303 EFDILNPRDVMEYFYDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSP 362

Query: 363 VGELGMVEMSQALNLIDVRYEQVGPDMLVSGFLQPLPDMVPVIPSLEETFVVDPTISRYE 422
           VG+LGMVEMSQA+NLIDV Y+QVGPDMLVSGFLQPLPD  P IPS EETF+ DP++S YE
Sbjct: 363 VGDLGMVEMSQAINLIDVCYQQVGPDMLVSGFLQPLPDTAPTIPSPEETFIADPSVSPYE 422

Query: 423 SSIIFFYKTWDPYGAFSNFSPHAIQMPDENGDYVTWSSVEHFYQAHKFVGADDACA-DCV 481
           SSIIFFYKTWDP+GA SNFSPH IQMPDENG+ VTW SVEH+YQAHKFVG DDA A DC+
Sbjct: 423 SSIIFFYKTWDPHGALSNFSPHPIQMPDENGENVTWLSVEHYYQAHKFVGVDDATAKDCL 482

Query: 482 ERIKSAKSPEEAAKIGRSMQRKRPDLV 508
           E+IKS KSPEEAA+IGRS+QR+RPDLV
Sbjct: 483 EKIKSVKSPEEAARIGRSIQRQRPDLV 509


>Medtr4g119220.1 | riboflavin biosynthesis protein RibD | HC |
           chr4:49364638-49361029 | 20130731
          Length = 431

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 175/376 (46%), Gaps = 31/376 (8%)

Query: 32  DAAYIKRAALIADKSAGFTAPHPNFGCVIATPSGDVAGEGYLYAEGTTPAEVQAVTAAGE 91
           D  Y++++  +A K  G+T+P+P  GCVI    G++ G+G+    G   AEV A+  AG+
Sbjct: 74  DGFYMRKSVELARKGLGYTSPNPLVGCVIVK-HGNIVGQGFHPKPGQPHAEVFALRDAGD 132

Query: 92  RCRGATAYLNMEPGDCHADSAAVS-ALLQGGVKRVVIGMRHPLQHHRGNAVRALRGEGLQ 150
               ATAY+++EP +    +   + AL++  +K+VVIGM  P        V  LR  G++
Sbjct: 133 LSENATAYVSLEPCNHFGRTPPCTEALIKAKIKKVVIGMVDPNPIVASKGVDRLRDAGIE 192

Query: 151 VDLLGEDLTSKLVEDAQKECLLVNAPLICRATSRIPFSVLKYAMTLDGKIAASSGHASWI 210
           V +  E+   K + +A    +L   PL+           L+Y+++++G +  S G+    
Sbjct: 193 VVVGVEEELCKSLNEAYIHHMLTGKPLL----------TLRYSLSVNGNLLDSLGNGVTD 242

Query: 211 SSKESRNLVFDLRGRSDAVIVGGNTVRKD---NPRLTVRHGGGRMPVRIVMSQTLNLPDE 267
           S      L+ +     DAVI+  +  R++   NP  T +  G   P+RI+M +     + 
Sbjct: 243 SGGYYSRLLQEY----DAVILSSSLFRENLSANPVPTSKEPGANQPIRIIMHKDSGSSNP 298

Query: 268 AHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVVEFDMLNSQDVMEYFHDRGYLSILWE 327
             L   +EV+   +     R +     A +G+E+V  D +N   +++Y + +G  S+L +
Sbjct: 299 IPLV-INEVTDKAIIFTNCRTATTPEEAQQGIEIVSMDQINLDVILDYCNRQGLCSVLLD 357

Query: 328 CGGT------LAASAISSGVIHKVFAFIAPKIIG-GKNAPSPVGELGMVEMSQALNLIDV 380
             G       L    I    I+K    + P   G  KN P     L +  + Q + + ++
Sbjct: 358 VRGNFSEYEDLVKEGIKKKYINKFVTEVLPVWNGCTKNDPL----LPLKNLDQGVKVENL 413

Query: 381 RYEQVGPDMLVSGFLQ 396
           R       +++ G+L 
Sbjct: 414 RPMASAQSVVIEGYLN 429