Miyakogusa Predicted Gene

Lj1g3v2823900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2823900.1 tr|Q6EJD1|Q6EJD1_PUEML Isopentenyl pyrophosphate
isomerase OS=Pueraria montana var. lobata GN=Ipi
PE,77.01,0,IPP_isom_1: isopentenyl-diphosphate
delta-isomeras,Isopentenyl-diphosphate delta-isomerase, type 1;
,CUFF.29569.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080060.1 | isopentenyl-diphosphate delta-isomerase | HC |...   221   2e-58

>Medtr7g080060.1 | isopentenyl-diphosphate delta-isomerase | HC |
           chr7:30427562-30423350 | 20130731
          Length = 287

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 4/121 (3%)

Query: 49  PLVASLSSHTAMGQTPTAA-DAGMDAVQRRLMFDDECILVDENDRVVGHDSKYNCHLMEK 107
           PL ASLS+   MG+TP AA DAGMDAVQRRLMFDDECILVDENDR VGH+SKYNCHL EK
Sbjct: 42  PLSASLST---MGETPVAAVDAGMDAVQRRLMFDDECILVDENDRAVGHESKYNCHLWEK 98

Query: 108 IESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLHRESELIEENSLG 167
           IESENLLHRAFSVFLFNSKYELLLQQRS+TKVTFPLVWTNTCCSHPL+RESELIEEN+LG
Sbjct: 99  IESENLLHRAFSVFLFNSKYELLLQQRSSTKVTFPLVWTNTCCSHPLYRESELIEENALG 158

Query: 168 I 168
           +
Sbjct: 159 V 159