Miyakogusa Predicted Gene

Lj1g3v2811590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2811590.1 Non Characterized Hit- tr|G1U5U2|G1U5U2_RABIT
Uncharacterized protein OS=Oryctolagus cuniculus
GN=IP,33.18,8e-19,RVT_2,Reverse transcriptase, RNA-dependent DNA
polymerase; IMPORTIN 11 (IMP11) (RAN-BINDING PROTEIN ,gene.g33630.t1.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g069460.2 | importin-like protein | HC | chr7:25590446-255...   283   1e-76
Medtr7g069460.1 | importin-like protein | HC | chr7:25590446-255...   283   1e-76

>Medtr7g069460.2 | importin-like protein | HC |
           chr7:25590446-25572272 | 20130731
          Length = 964

 Score =  283 bits (725), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 174/262 (66%), Gaps = 15/262 (5%)

Query: 49  HAFSAQDYVALGLVFCF-FSKITDPEPYLLSFEQFLIQCMVMIKNILECKEYKPTLTGRV 107
           H +S  D   L  V  F  ++ITDPEP L+SFEQFLIQCMVMIK+ILECKEYKP+LTGRV
Sbjct: 258 HPYSFGDKFVLSSVMDFCLNRITDPEPNLMSFEQFLIQCMVMIKSILECKEYKPSLTGRV 317

Query: 108 MDENGVTLEQIKKNIXXXXXXXXXXXXPNERIVLLCNVLIQRYFVLTASDLEEWYRNPES 167
           +DE GVTLEQ+KKNI            PNERIVLLCNVLI RYFVLTASDLEEWYRNPES
Sbjct: 318 VDEKGVTLEQMKKNISSAVGGVVTTLLPNERIVLLCNVLITRYFVLTASDLEEWYRNPES 377

Query: 168 FHHEQDMVQWTEKLRPCAEALYIVLFENYSQLLCPVVGSILQEAMKSCPTSVTENTPXXX 227
           FHHEQDMVQWTEKLRPCAEALYIVLFEN  QLL PVV S+LQE M +CPT+VTE T    
Sbjct: 378 FHHEQDMVQWTEKLRPCAEALYIVLFENNGQLLAPVVVSLLQETMNNCPTTVTEITSALL 437

Query: 228 XXXXXXXXXXXXXXXXSNYLSFKDWPQGKCIY---------LVLYVEGIVITGDGHNDI- 277
                           SNYLSFKDW  G   +          +++ +  VI G   ++I 
Sbjct: 438 LKDAAYGAAAYVYYELSNYLSFKDWFNGALSHELSNDHPNLFIIHRKVAVILGQWVSEIK 497

Query: 278 DRLKQ----HLFRRCQTKDLAL 295
           D  K+     L R  Q KDL++
Sbjct: 498 DETKRPVYCALIRLLQGKDLSV 519


>Medtr7g069460.1 | importin-like protein | HC |
           chr7:25590446-25572272 | 20130731
          Length = 1007

 Score =  283 bits (725), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 174/262 (66%), Gaps = 15/262 (5%)

Query: 49  HAFSAQDYVALGLVFCF-FSKITDPEPYLLSFEQFLIQCMVMIKNILECKEYKPTLTGRV 107
           H +S  D   L  V  F  ++ITDPEP L+SFEQFLIQCMVMIK+ILECKEYKP+LTGRV
Sbjct: 301 HPYSFGDKFVLSSVMDFCLNRITDPEPNLMSFEQFLIQCMVMIKSILECKEYKPSLTGRV 360

Query: 108 MDENGVTLEQIKKNIXXXXXXXXXXXXPNERIVLLCNVLIQRYFVLTASDLEEWYRNPES 167
           +DE GVTLEQ+KKNI            PNERIVLLCNVLI RYFVLTASDLEEWYRNPES
Sbjct: 361 VDEKGVTLEQMKKNISSAVGGVVTTLLPNERIVLLCNVLITRYFVLTASDLEEWYRNPES 420

Query: 168 FHHEQDMVQWTEKLRPCAEALYIVLFENYSQLLCPVVGSILQEAMKSCPTSVTENTPXXX 227
           FHHEQDMVQWTEKLRPCAEALYIVLFEN  QLL PVV S+LQE M +CPT+VTE T    
Sbjct: 421 FHHEQDMVQWTEKLRPCAEALYIVLFENNGQLLAPVVVSLLQETMNNCPTTVTEITSALL 480

Query: 228 XXXXXXXXXXXXXXXXSNYLSFKDWPQGKCIY---------LVLYVEGIVITGDGHNDI- 277
                           SNYLSFKDW  G   +          +++ +  VI G   ++I 
Sbjct: 481 LKDAAYGAAAYVYYELSNYLSFKDWFNGALSHELSNDHPNLFIIHRKVAVILGQWVSEIK 540

Query: 278 DRLKQ----HLFRRCQTKDLAL 295
           D  K+     L R  Q KDL++
Sbjct: 541 DETKRPVYCALIRLLQGKDLSV 562