Miyakogusa Predicted Gene

Lj1g3v2809470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2809470.1 tr|B9GR88|B9GR88_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_645504 PE=4
SV=1,37.01,0.00000000000003,coiled-coil,NULL;
seg,NULL,gene.g33621.t1.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g079480.1 | late embryogenesis abundant protein/LEA protei...   159   1e-39

>Medtr7g079480.1 | late embryogenesis abundant protein/LEA protein,
           putative | HC | chr7:30171777-30170892 | 20130731
          Length = 199

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 113/201 (56%), Gaps = 50/201 (24%)

Query: 1   MAGSNLVTSLPKFGHXXXXXXXXXXWNTRVFAAATPRPIQVPTSHDQEGSVTSDGL---- 56
           MA   L+TSLPKFG           WN+RVFAAA+PR IQVP SH+++GS+T+DG+    
Sbjct: 1   MASFTLITSLPKFGSAAATIARARPWNSRVFAAASPRLIQVPKSHNEDGSITTDGIKQGA 60

Query: 57  NTTETINNSLNEPLQDKAYSSNAAEHINNKAKDTANQISKKAQNITEKAKQTMQEAWDST 116
             +ET++NSLNE   +KAYS+    H+ N+ KD AN+ S   QNI EKAKQTMQEAWDST
Sbjct: 61  GVSETVSNSLNESAHEKAYSTG--HHVANQTKDAANKASAATQNIAEKAKQTMQEAWDST 118

Query: 117 KNNANKAADNVLG--------------------------------------------KTQ 132
           KN AN AAD+V                                              KT+
Sbjct: 119 KNKANNAADSVKQTCADGKAEVEAKADRAAENVKQTCADGKAEAEARADSVSDKVSEKTK 178

Query: 133 KSAEYVKENAETVKENMNSKN 153
           +SAEYVK+NAE V+ NMN KN
Sbjct: 179 QSAEYVKDNAEAVRRNMNKKN 199