Miyakogusa Predicted Gene

Lj1g3v2807690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2807690.1 Non Characterized Hit- tr|K4AZR0|K4AZR0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,51.33,3e-18,coiled-coil,NULL; seg,NULL,CUFF.29499.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g079200.1 | coiled-coil vesicle tethering-like protein, pu...   147   2e-36
Medtr8g028445.1 | coiled-coil vesicle tethering protein, putativ...   104   2e-23
Medtr8g028445.2 | coiled-coil vesicle tethering protein, putativ...    50   4e-07

>Medtr7g079200.1 | coiled-coil vesicle tethering-like protein,
           putative | HC | chr7:30045737-30035708 | 20130731
          Length = 755

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 84/112 (75%), Gaps = 4/112 (3%)

Query: 1   MWGTIANLKENLNKIALDVHFXXXXXXGVGIPPYGSPAHGESTPVSDRRNSYGHTRARSI 60
           MW TIANLKENLN+IALDVH          I  Y  P  GES  VSDRRNS G TR+ SI
Sbjct: 1   MWSTIANLKENLNQIALDVH--NDDDDEDDIVSYAIPNDGESPSVSDRRNSRGSTRSNSI 58

Query: 61  PRSPASNGTSTTDPPYASEIEQYKAEIKRLQASEAEIKALSINYAALLKEKE 112
           PRSP  NG +  D PY+SEIEQY+AEIKRLQASEAEIKALS+NYAALLKEKE
Sbjct: 59  PRSPIPNGIA--DHPYSSEIEQYRAEIKRLQASEAEIKALSVNYAALLKEKE 108


>Medtr8g028445.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr8:10777715-10786126 | 20130731
          Length = 728

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 68/112 (60%), Gaps = 22/112 (19%)

Query: 1   MWGTIANLKENLNKIALDVHFXXXXXXGVGIPPYGSPAHGESTPVSDRRNSYGHTRARSI 60
           MW TIANLKENLNKIALDVH        V           + + VSD  NS G  R    
Sbjct: 1   MWSTIANLKENLNKIALDVHDKDEEEDEVS----------KESSVSDSWNSNGFVR---- 46

Query: 61  PRSPASNGTSTTDPPYASEIEQYKAEIKRLQASEAEIKALSINYAALLKEKE 112
                SNG    D    SEIEQYKAEI+RLQASEAEIKALSINYAALLKEKE
Sbjct: 47  -----SNGV---DRVLLSEIEQYKAEIERLQASEAEIKALSINYAALLKEKE 90


>Medtr8g028445.2 | coiled-coil vesicle tethering protein, putative
          | HC | chr8:10777715-10786126 | 20130731
          Length = 695

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 1  MWGTIANLKENLNKIALDVHFXXXXXXGVGIPPYGSPAHGESTPVSDRRNSYGHTRARSI 60
          MW TIANLKENLNKIALDVH        V           + + VSD  NS G  R+  +
Sbjct: 1  MWSTIANLKENLNKIALDVHDKDEEEDEV----------SKESSVSDSWNSNGFVRSNGV 50

Query: 61 PR 62
           R
Sbjct: 51 DR 52