Miyakogusa Predicted Gene

Lj1g3v2635110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2635110.1 Non Characterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000003,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.29418.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g033700.1 | hypothetical protein | HC | chr7:12288639-1229...   182   2e-46
Medtr8g063090.1 | hypothetical protein | LC | chr8:26417759-2642...   176   1e-44
Medtr7g033685.2 | RNA-directed DNA methylation protein | LC | ch...   158   2e-39
Medtr7g033685.1 | RNA-directed DNA methylation protein | LC | ch...   136   8e-33
Medtr7g033685.3 | RNA-directed DNA methylation protein | LC | ch...   122   1e-28
Medtr7g033685.4 | RNA-directed DNA methylation protein | LC | ch...   122   2e-28

>Medtr7g033700.1 | hypothetical protein | HC |
           chr7:12288639-12296017 | 20130731
          Length = 369

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 120/182 (65%), Gaps = 16/182 (8%)

Query: 1   MQHVETITSSEVTFDLVHSIVDXXXXXXXXXXXXXXXXXNFIKKDDCARKQDQLLFKAKQ 60
           +QHVETI+SSEVT D+V S V+                 NF +      KQDQL FKAKQ
Sbjct: 74  VQHVETISSSEVTLDIVQSFVEPASRSASESKSKVEERKNFFRN---VNKQDQLFFKAKQ 130

Query: 61  DIESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEE 120
           + ES AKD RFEQIWKS K NKGT  E AL EIC FYDIVR+D++EK+ +VQQ+ +SLE+
Sbjct: 131 EKESSAKDARFEQIWKSRKVNKGTADENALQEICQFYDIVRVDSEEKVNQVQQEDMSLED 190

Query: 121 KMLLSSFLPLLRDAVPIAASEIE------------ETYVYDFYTVKDEMHV-EDSSCSYP 167
           + LLSSFLPLLR+ +P AA+EIE            E YVYD YTV DE  V EDSS SYP
Sbjct: 191 QKLLSSFLPLLREVIPNAAAEIEDDISAHSKQEYIEDYVYDLYTVTDETIVEEDSSHSYP 250

Query: 168 LV 169
           LV
Sbjct: 251 LV 252


>Medtr8g063090.1 | hypothetical protein | LC |
           chr8:26417759-26423230 | 20130731
          Length = 356

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 119/179 (66%), Gaps = 13/179 (7%)

Query: 1   MQHVETITSSEVTFDLVHSIVDXXXXXXXXXXXXXXXXXNFIKKDDCARKQDQLLFKAKQ 60
           +QHVETI+SS+VT D+V S V+                 NF KK    +KQDQLL KAKQ
Sbjct: 72  VQHVETISSSDVTLDIVQSFVEPGSRSASESKPNVVERKNFFKK---VKKQDQLLVKAKQ 128

Query: 61  DIESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEE 120
           + +  AKD RFEQIWKS K NK T  E  L EIC FYDIVR+D++E IKEVQQ+ ISLE+
Sbjct: 129 EKQFSAKDARFEQIWKSRKVNKATADENVLQEICQFYDIVRVDSEENIKEVQQEDISLED 188

Query: 121 KMLLSSFLPLLRDAVPIAASEIE---------ETYVYDFYTVKDEMHV-EDSSCSYPLV 169
           + LLSSFLPLLR+ +P AA+E+E         E YVYD YTV DE  V E+SS SYPLV
Sbjct: 189 QRLLSSFLPLLREVIPNAAAEVEADISDHSKQEDYVYDLYTVTDETIVEENSSHSYPLV 247


>Medtr7g033685.2 | RNA-directed DNA methylation protein | LC |
           chr7:12279339-12273128 | 20130731
          Length = 474

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 114/181 (62%), Gaps = 16/181 (8%)

Query: 1   MQHVETITSSEVTFDLVHSIVDXXXXXXXXXXXXXXXXXNFIKKDDCARKQDQLLFKAKQ 60
           +QH++TI+SSEVT D+V S ++                 NF K      KQDQ LFK  Q
Sbjct: 143 VQHLKTISSSEVTIDIVRSFLEPRSRSASKSESKVEKRKNFKK----VNKQDQFLFKGNQ 198

Query: 61  DIESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEE 120
           + ES AKD RFEQI K+    K T  EKAL EIC+FYDIVRID +EKI+EVQQ+ I LE+
Sbjct: 199 EKESSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLED 258

Query: 121 KMLLSSFLPLLRDAVPIAASEIE-----------ETYVYDFYTVKDEM-HVEDSSCSYPL 168
           + LL++F+PLL D +P AA+EIE           E YVYD YTV DEM   EDSSC YPL
Sbjct: 259 QRLLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPL 318

Query: 169 V 169
           +
Sbjct: 319 L 319


>Medtr7g033685.1 | RNA-directed DNA methylation protein | LC |
           chr7:12277220-12273128 | 20130731
          Length = 394

 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 105/181 (58%), Gaps = 30/181 (16%)

Query: 1   MQHVETITSSEVTFDLVHSIVDXXXXXXXXXXXXXXXXXNFIKKDDCARKQDQLLFKAKQ 60
           +QH++TI+SSEVT D+V S ++                 NF K                 
Sbjct: 77  VQHLKTISSSEVTIDIVRSFLEPRSRSASKSESKVEKRKNFKK----------------- 119

Query: 61  DIESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEE 120
            + S AKD RFEQI K+    K T  EKAL EIC+FYDIVRID +EKI+EVQQ+ I LE+
Sbjct: 120 -VNSSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLED 178

Query: 121 KMLLSSFLPLLRDAVPIAASEIE-----------ETYVYDFYTVKDEM-HVEDSSCSYPL 168
           + LL++F+PLL D +P AA+EIE           E YVYD YTV DEM   EDSSC YPL
Sbjct: 179 QRLLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPL 238

Query: 169 V 169
           +
Sbjct: 239 L 239


>Medtr7g033685.3 | RNA-directed DNA methylation protein | LC |
           chr7:12274803-12273128 | 20130731
          Length = 278

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 84/120 (70%), Gaps = 12/120 (10%)

Query: 62  IESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEEK 121
           ++S AKD RFEQI K+    K T  EKAL EIC+FYDIVRID +EKI+EVQQ+ I LE++
Sbjct: 6   LQSSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQ 65

Query: 122 MLLSSFLPLLRDAVPIAASEIE-----------ETYVYDFYTVKDEM-HVEDSSCSYPLV 169
            LL++F+PLL D +P AA+EIE           E YVYD YTV DEM   EDSSC YPLV
Sbjct: 66  RLLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLV 125


>Medtr7g033685.4 | RNA-directed DNA methylation protein | LC |
           chr7:12274803-12273128 | 20130731
          Length = 280

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 84/120 (70%), Gaps = 12/120 (10%)

Query: 62  IESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEEK 121
           ++S AKD RFEQI K+    K T  EKAL EIC+FYDIVRID +EKI+EVQQ+ I LE++
Sbjct: 6   LQSSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQ 65

Query: 122 MLLSSFLPLLRDAVPIAASEIE-----------ETYVYDFYTVKDEM-HVEDSSCSYPLV 169
            LL++F+PLL D +P AA+EIE           E YVYD YTV DEM   EDSSC YPL+
Sbjct: 66  RLLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLL 125