Miyakogusa Predicted Gene

Lj1g3v2628710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2628710.1 tr|G8A207|G8A207_MEDTR Remorin OS=Medicago
truncatula GN=MTR_128s0001 PE=2 SV=1,60,5e-19,FAMILY NOT NAMED,NULL;
coiled-coil,NULL; Remorin_C,Remorin, C-terminal; Remorin_N,Remorin,
N-termina,CUFF.29379.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g031370.1 | carboxy-terminal region remorin | HC | chr8:11...   114   3e-26
Medtr1g100647.1 | carboxy-terminal region remorin | HC | chr1:45...    98   2e-21
Medtr7g076730.1 | carboxy-terminal region remorin | HC | chr7:28...    82   2e-16
Medtr5g010590.2 | carboxy-terminal region remorin | HC | chr5:28...    68   2e-12
Medtr5g010590.1 | carboxy-terminal region remorin | HC | chr5:28...    68   3e-12
Medtr8g097320.1 | carboxy-terminal region remorin | HC | chr8:40...    68   3e-12
Medtr8g097320.2 | carboxy-terminal region remorin | HC | chr8:40...    62   1e-10

>Medtr8g031370.1 | carboxy-terminal region remorin | HC |
           chr8:11753967-11749805 | 20130731
          Length = 200

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 72/93 (77%), Gaps = 4/93 (4%)

Query: 32  APEVAADDSKALVVVP-EKTPVPENKPSSKGSLDRDVALAELEKEKRLSYVKAWEESEKS 90
           AP   ADD+KALVVV  EK P P  K     SLDRD+ALAE+ KEKRLS VKAWE+SEK+
Sbjct: 48  APPPVADDTKALVVVDNEKIPEPVKK---NASLDRDIALAEIGKEKRLSNVKAWEDSEKT 104

Query: 91  KTENKAQKNLSDVVEWENSKKAALEAQLRKIEE 123
           K ENKAQK LS V  WENSKKAALEAQLRKIEE
Sbjct: 105 KAENKAQKQLSTVAAWENSKKAALEAQLRKIEE 137


>Medtr1g100647.1 | carboxy-terminal region remorin | HC |
           chr1:45590830-45593341 | 20130731
          Length = 209

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 61/85 (71%)

Query: 40  SKALVVVPEKTPVPENKPSSKGSLDRDVALAELEKEKRLSYVKAWEESEKSKTENKAQKN 99
           SKALV+V +     E KP   GS+DRD  L  +  EKRLS +KAWEESEKSK ENKAQ+ 
Sbjct: 63  SKALVIVQKTDEAAEEKPKEGGSIDRDAVLTRVATEKRLSLIKAWEESEKSKAENKAQRR 122

Query: 100 LSDVVEWENSKKAALEAQLRKIEEM 124
           LS +  WENSKKAA EA+LRK+EE 
Sbjct: 123 LSTITAWENSKKAAKEAELRKLEEQ 147


>Medtr7g076730.1 | carboxy-terminal region remorin | HC |
           chr7:28942331-28943740 | 20130731
          Length = 133

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 50/58 (86%)

Query: 66  DVALAELEKEKRLSYVKAWEESEKSKTENKAQKNLSDVVEWENSKKAALEAQLRKIEE 123
           D+ LAE+ KEK+L YVKAWEESEK+K +NKA K++S +  WE+SKKAALEA+L+KIEE
Sbjct: 13  DIVLAEVTKEKKLCYVKAWEESEKTKADNKAHKHISSIAAWEDSKKAALEAELKKIEE 70


>Medtr5g010590.2 | carboxy-terminal region remorin | HC |
           chr5:2869609-2871940 | 20130731
          Length = 194

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 65  RDVALAELEKEKRLSYVKAWEESEKSKTENKAQKNLSDVVEWENSKKAALEAQLRKIE 122
           RD  LA++  EKRL+ +KAWEESEK+K EN+A K  S V  WE SKK+++EAQL+K E
Sbjct: 86  RDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFE 143


>Medtr5g010590.1 | carboxy-terminal region remorin | HC |
           chr5:2869609-2871761 | 20130731
          Length = 209

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 65  RDVALAELEKEKRLSYVKAWEESEKSKTENKAQKNLSDVVEWENSKKAALEAQLRKIEE 123
           RD  LA++  EKRL+ +KAWEESEK+K EN+A K  S V  WE SKK+++EAQL+K EE
Sbjct: 86  RDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEE 144


>Medtr8g097320.1 | carboxy-terminal region remorin | HC |
           chr8:40772400-40769635 | 20130731
          Length = 205

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 48/64 (75%)

Query: 59  SKGSLDRDVALAELEKEKRLSYVKAWEESEKSKTENKAQKNLSDVVEWENSKKAALEAQL 118
           +K S+DRD  LA +E +KRL+ +KAWEE+EK+K EN+A K  S V  WE+ KKA++EA+ 
Sbjct: 71  TKDSVDRDAVLARVESQKRLALIKAWEENEKTKVENRAYKMQSAVDLWEDDKKASIEAKF 130

Query: 119 RKIE 122
           + IE
Sbjct: 131 KGIE 134


>Medtr8g097320.2 | carboxy-terminal region remorin | HC |
           chr8:40772237-40769635 | 20130731
          Length = 208

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 59  SKGSLDR---DVALAELEKEKRLSYVKAWEESEKSKTENKAQKNLSDVVEWENSKKAALE 115
           +K S+DR   D  LA +E +KRL+ +KAWEE+EK+K EN+A K  S V  WE+ KKA++E
Sbjct: 71  TKDSVDRVPLDAVLARVESQKRLALIKAWEENEKTKVENRAYKMQSAVDLWEDDKKASIE 130

Query: 116 AQLRKIE 122
           A+ + IE
Sbjct: 131 AKFKGIE 137