Miyakogusa Predicted Gene

Lj1g3v2626350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2626350.1 Non Characterized Hit- tr|I3TAG0|I3TAG0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,50,4e-19,seg,NULL,CUFF.29332.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g078070.1 | geranylgeranyl pyrophosphate synthase | HC | c...    81   2e-16

>Medtr8g078070.1 | geranylgeranyl pyrophosphate synthase | HC |
           chr8:33275574-33277440 | 20130731
          Length = 372

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 11/114 (9%)

Query: 1   MSFVNLNTWARPSFVMNHATRSRS-------PTFYLFHGLRKIRISPIIPAKPQRYQLCS 53
           MS VNLNTW   +F+ N  T + +       P+FY       I +SPI P+KP       
Sbjct: 1   MSAVNLNTWTHSNFMCNQVTTTATTRSRSRIPSFYFTK--IPISVSPIKPSKPNSSS--F 56

Query: 54  SSTVSAVMXXXXXXXXXXXXXXFNFKSYMIQKATQVNQALDDAVSLQDPLKIHE 107
           S +VS+++              FNFKSYMI+KAT+VN+ALDDAVSL++PLK+HE
Sbjct: 57  SFSVSSLLTKQEPIEAEEQNPIFNFKSYMIEKATRVNKALDDAVSLREPLKVHE 110