Miyakogusa Predicted Gene
- Lj1g3v2626080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2626080.1 Non Characterized Hit- tr|I3SZH1|I3SZH1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.15,0.000000000000003,FBOX,F-box domain, cyclin-like;
F-box,F-box domain, cyclin-like; seg,NULL; no description,NULL;
F-bo,NODE_67840_length_169_cov_15.147929.path1.1
(53 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g055165.1 | F-box protein interaction domain protein | LC ... 55 2e-08
Medtr1g055135.1 | galactose oxidase | LC | chr1:24309570-2431113... 52 2e-07
Medtr1g055135.2 | galactose oxidase | LC | chr1:24309570-2431241... 52 2e-07
Medtr4g011660.1 | F-box and associated interaction domain protei... 50 5e-07
Medtr3g034130.1 | galactose oxidase | LC | chr3:11006623-1100504... 50 7e-07
Medtr4g109290.1 | galactose oxidase | HC | chr4:45385404-4538431... 49 1e-06
Medtr3g034180.1 | galactose oxidase | LC | chr3:11026011-1102363... 49 1e-06
Medtr2g021150.1 | F-box protein interaction domain protein | HC ... 48 2e-06
Medtr4g109280.1 | F-box protein interaction domain protein | LC ... 48 2e-06
Medtr7g077070.1 | F-box protein interaction domain protein | LC ... 48 2e-06
Medtr5g022420.1 | F-box protein interaction domain protein | LC ... 47 3e-06
Medtr8g013010.1 | F-box protein interaction domain protein | LC ... 47 4e-06
Medtr1g094210.1 | F-box protein interaction domain protein | HC ... 47 5e-06
Medtr2g055970.1 | F-box protein interaction domain protein | LC ... 47 6e-06
Medtr8g032390.1 | F-box protein interaction domain protein | LC ... 47 6e-06
Medtr1g094210.2 | F-box protein interaction domain protein | HC ... 46 6e-06
Medtr2g048580.1 | F-box protein interaction domain protein | HC ... 46 7e-06
>Medtr1g055165.1 | F-box protein interaction domain protein | LC |
chr1:24339939-24341078 | 20130731
Length = 318
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 23 LPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
LPDELI ILVRLPV SL+RFKSVCKSW S+
Sbjct: 10 LPDELITKILVRLPVKSLIRFKSVCKSWFSL 40
>Medtr1g055135.1 | galactose oxidase | LC | chr1:24309570-24311139
| 20130731
Length = 375
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 12 TAENPSLSSVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
AE + LPDELI ILVRLPV SL+RFKSVCK W S+
Sbjct: 2 AAEADADQPPYLPDELITKILVRLPVKSLIRFKSVCKLWFSL 43
>Medtr1g055135.2 | galactose oxidase | LC | chr1:24309570-24312415
| 20130731
Length = 375
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 12 TAENPSLSSVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
AE + LPDELI ILVRLPV SL+RFKSVCK W S+
Sbjct: 2 AAEADADQPPYLPDELITKILVRLPVKSLIRFKSVCKLWFSL 43
>Medtr4g011660.1 | F-box and associated interaction domain protein
| HC | chr4:2910011-2911364 | 20130731
Length = 419
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 11 STAENPSLSSVLLPDELIEAILVRLPVSSLLRFKSVCKSW 50
+ NPS SV LPDE++ IL RLPV SL++ KSVCKSW
Sbjct: 7 HSHSNPSPPSVTLPDEVLTEILSRLPVKSLIQMKSVCKSW 46
>Medtr3g034130.1 | galactose oxidase | LC | chr3:11006623-11005048
| 20130731
Length = 370
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 19 SSVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
+ + LP ELI IL+RLPV SL+RFK VCKSWL++
Sbjct: 5 TGLYLPHELIIQILLRLPVKSLIRFKCVCKSWLTL 39
>Medtr4g109290.1 | galactose oxidase | HC | chr4:45385404-45384313
| 20130731
Length = 188
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 23 LPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
+P+EL+ IL+RLPV SL+RFKSVCKSW S+
Sbjct: 9 MPNELMIQILLRLPVKSLIRFKSVCKSWFSL 39
>Medtr3g034180.1 | galactose oxidase | LC | chr3:11026011-11023631 |
20130731
Length = 489
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 19 SSVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
+ + LP ELI I++RLPV SL+RFK VCKSWL++
Sbjct: 119 TDLYLPHELIIQIMLRLPVKSLIRFKCVCKSWLAL 153
>Medtr2g021150.1 | F-box protein interaction domain protein | HC |
chr2:7149324-7147234 | 20130731
Length = 372
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 22 LLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
LP+ELI IL++LP+ SLLRF+ VCKSWL +
Sbjct: 13 FLPEELILEILIKLPIKSLLRFRCVCKSWLHI 44
>Medtr4g109280.1 | F-box protein interaction domain protein | LC |
chr4:45372690-45370154 | 20130731
Length = 359
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 23 LPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
+P EL+ IL+RLPV SL+RFK VCKSW S+
Sbjct: 8 MPHELMIQILLRLPVKSLIRFKCVCKSWFSI 38
>Medtr7g077070.1 | F-box protein interaction domain protein | LC |
chr7:29105856-29107927 | 20130731
Length = 431
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 12 TAENPSLSSVLLPDELIEAILVRLPVSSLLRFKSVCKSW 50
+A++ +LSSV+LPD+LI +L LPV LLRF+SV KSW
Sbjct: 5 SAKSMALSSVVLPDDLIAEVLSFLPVIFLLRFRSVSKSW 43
>Medtr5g022420.1 | F-box protein interaction domain protein | LC |
chr5:8838675-8837533 | 20130731
Length = 380
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 24/29 (82%)
Query: 22 LLPDELIEAILVRLPVSSLLRFKSVCKSW 50
LP+ELI IL+RLPV SLLRFK VCKSW
Sbjct: 26 FLPEELIVIILLRLPVRSLLRFKCVCKSW 54
>Medtr8g013010.1 | F-box protein interaction domain protein | LC |
chr8:4032570-4031623 | 20130731
Length = 315
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 23 LPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
+P ELI IL+RLP+ SL+RFK VCKSWL++
Sbjct: 54 MPHELIIQILLRLPMKSLIRFKCVCKSWLTL 84
>Medtr1g094210.1 | F-box protein interaction domain protein | HC |
chr1:42413939-42416016 | 20130731
Length = 401
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 19 SSVLLPDELIEAILVRLPVSSLLRFKSVCKSW 50
S +LPD+++ AIL+RLPV SLL+F+ VCKSW
Sbjct: 53 SPPILPDDIVVAILLRLPVRSLLQFRCVCKSW 84
>Medtr2g055970.1 | F-box protein interaction domain protein | LC |
chr2:24000830-24002612 | 20130731
Length = 563
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 20 SVLLPDELIEAILVRLPVSSLLRFKSVCKSW 50
S+ LP+E+I IL+RLPV SLL+FK VCKSW
Sbjct: 208 SLFLPEEIIVNILLRLPVRSLLQFKCVCKSW 238
>Medtr8g032390.1 | F-box protein interaction domain protein | LC |
chr8:12194767-12195947 | 20130731
Length = 372
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 20 SVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
++ LP ELI IL+RLPV SLL FK +CKSWLS+
Sbjct: 37 TLYLPSELIIQILLRLPVKSLLCFKCICKSWLSL 70
>Medtr1g094210.2 | F-box protein interaction domain protein | HC |
chr1:42413939-42416307 | 20130731
Length = 414
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 22 LLPDELIEAILVRLPVSSLLRFKSVCKSW 50
+LPD+++ AIL+RLPV SLL+F+ VCKSW
Sbjct: 56 ILPDDIVVAILLRLPVRSLLQFRCVCKSW 84
>Medtr2g048580.1 | F-box protein interaction domain protein | HC |
chr2:21425948-21427041 | 20130731
Length = 342
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 20 SVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSV 53
SV LP+E+I+ IL+RLPV +LLR + VCK WLS+
Sbjct: 5 SVYLPEEVIKEILLRLPVKTLLRCRCVCKLWLSI 38