Miyakogusa Predicted Gene

Lj1g3v2624830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2624830.1 Non Characterized Hit- tr|I1L6Q0|I1L6Q0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38012
PE,81.03,0,RrnaAD,Ribosomal RNA adenine methylase transferase;
Ribosomal RNA adenine dimethylases,Ribosomal RNA,CUFF.29306.1
         (348 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g076280.1 | ribosomal RNA small subunit methyltransferase ...   536   e-152
Medtr3g007750.1 | dimethyladenosine transferase | HC | chr3:1163...    91   2e-18
Medtr5g021210.1 | ribosomal RNA adenine dimethylase family prote...    89   9e-18

>Medtr7g076280.1 | ribosomal RNA small subunit methyltransferase A |
           HC | chr7:28703298-28698178 | 20130731
          Length = 349

 Score =  536 bits (1380), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/343 (77%), Positives = 291/343 (84%), Gaps = 3/343 (0%)

Query: 7   CYLQTLPPIP-NATALNHHREPPPTVPYSTAGARRRRLHVVCAGGGGRPSTRSADDYNAT 65
           CYLQTLPPI  NAT  + H+ PPP  P  T   R R+ +V C  G  R ST + DDY+AT
Sbjct: 9   CYLQTLPPISHNATFNSRHKPPPPRNP--TGDKRSRKFYVACGRGNNRASTTNKDDYHAT 66

Query: 66  LRALNSKGRFPRKSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGA 125
           L+ALNSKGR P+KSLGQ+YMLNS+INEQL GVAG+++GDVVLEIGPGTGSLTN L++SGA
Sbjct: 67  LKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSLTNTLINSGA 126

Query: 126 FVLAVEKDKHMAALVCERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKV 185
           FVLAVEKDKHMAALV ERFSSTGKLKVL EDIVKCHVRSH+SSLVGST+  D +TR AKV
Sbjct: 127 FVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRSHISSLVGSTEDIDSDTRKAKV 186

Query: 186 VANIPFNISTDVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFVNYYSD 245
           VANIPF ISTDV+KLLLPMGDIFSEVVLLLQEETA+R V  SLRT EYRPINIFVN+YSD
Sbjct: 187 VANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWVEPSLRTPEYRPINIFVNFYSD 246

Query: 246 PEYKFKVPRANFFPQPNVDAAVVSFKLKLPSEYPQVXXXXXXXXMVNSGFNEKRKMLRKS 305
           PEYKFKV R NFFPQPNVDAAVVSFKLK PSEYPQV        MVNS FNEKRKM+RKS
Sbjct: 247 PEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMVNSAFNEKRKMIRKS 306

Query: 306 LQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKLHNLISKE 348
           LQHICTSLEIEEAL+S+GL  TSRPEELTLDDFVKLHN I+KE
Sbjct: 307 LQHICTSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSITKE 349


>Medtr3g007750.1 | dimethyladenosine transferase | HC |
           chr3:1163183-1158375 | 20130731
          Length = 351

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 20/200 (10%)

Query: 78  KSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEKDKHMA 137
           KS GQH + N  + + +   +GI+  DVVLEIGPGTG+LT  LL++G  V+AVE D  M 
Sbjct: 28  KSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAGKKVIAVEIDPRMV 87

Query: 138 ALVCERFSST--GKLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANIPFNIST 195
             + +RF  T   +L V+  D++K  +                       VANIP+ IS+
Sbjct: 88  LELNKRFQGTPSSRLTVIQGDVLKTELPYF-----------------DICVANIPYQISS 130

Query: 196 DVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFVNYYSDPEYKFKVPRA 255
            +   LL     F   +++ Q E A+RLV        Y  + +    ++   +  KV R 
Sbjct: 131 PLTFKLLKHQPAFRCAIIMFQREFAMRLVAQP-GDKLYCRLTVNTQLHARISHLLKVGRN 189

Query: 256 NFFPQPNVDAAVVSFKLKLP 275
           NF P P VD++VV  + K P
Sbjct: 190 NFRPPPKVDSSVVRIEPKKP 209


>Medtr5g021210.1 | ribosomal RNA adenine dimethylase family protein
           | HC | chr5:8153093-8155684 | 20130731
          Length = 332

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 24/243 (9%)

Query: 78  KSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEKDKHMA 137
           KS GQH + N  + + +   + I   D VLEIGPGTG+LT  LL++   V+A+E D+ M 
Sbjct: 34  KSRGQHILTNPRVLDTIVQKSAINPSDTVLEIGPGTGNLTLKLLEASREVVAIEIDQRMV 93

Query: 138 ALVCERFSSTG---KLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANIPFNIS 194
            ++  R    G   KL V+++D ++                         VVANIP+ IS
Sbjct: 94  NILENRALKRGLRNKLTVISKDALRTEFPPF-----------------DLVVANIPYGIS 136

Query: 195 TDVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFVNYYSDPEYKFKVPR 254
           + ++  L+     F    LLLQ+E A RL+ +    SE+  + + +   +D E+   V +
Sbjct: 137 SPLIIKLIYETTPFRSATLLLQKEFARRLLANP-GDSEFNRLAVNIKLLADVEFVMDVSK 195

Query: 255 ANFFPQPNVDAAVVSFKLKLPSEYPQVXXXXXXXXMVNSGFNEKRKMLRKSLQHICTSLE 314
            +F P P VD++VV  + K+    P V           + FN K K L  + ++    LE
Sbjct: 196 RDFLPSPKVDSSVVIIRPKV--NVPAV-NLHQWRAFTRTCFNNKNKTLGATFKNKRKVLE 252

Query: 315 IEE 317
           + E
Sbjct: 253 LLE 255