Miyakogusa Predicted Gene

Lj1g3v2612700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2612700.1 Non Characterized Hit- tr|Q8VWW4|Q8VWW4_ORYSA
Putative uncharacterized protein (Fragment) OS=Oryza
s,65.67,1e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.29303.1
         (366 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g076190.1 | cyclin-like F-box protein | HC | chr7:28649715...   481   e-136
Medtr6g042460.1 | F-box plant-like protein | LC | chr6:14661202-...   149   3e-36
Medtr0032s0060.1 | F-box plant-like protein | HC | scaffold0032:...    94   3e-19
Medtr6g042480.1 | DUF4283 domain protein | LC | chr6:14672878-14...    54   2e-07

>Medtr7g076190.1 | cyclin-like F-box protein | HC |
           chr7:28649715-28655225 | 20130731
          Length = 377

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 277/361 (76%), Gaps = 23/361 (6%)

Query: 1   MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
           MSMM+   DFLS +D D SLKI  CLDDP DLVRV CVSRSWRH+V+ N L KQLCLR+F
Sbjct: 1   MSMMDHSNDFLSLIDIDTSLKIFKCLDDPADLVRVCCVSRSWRHFVVTNGLSKQLCLRMF 60

Query: 61  PQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKT 120
           PQLSRV  VVE NQ+G+    +VGSS S+   ALQ+DHRVY+Y A S  S V+++CIAK 
Sbjct: 61  PQLSRVASVVELNQNGVNGQTDVGSSQSIS-PALQKDHRVYSYFANSCLSPVAVDCIAKA 119

Query: 121 IVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEIN 180
           I ASSTDNFPQESID+TL+  D++AGR+SYWSS+G SNPNVPETLTY L SQICV+TEIN
Sbjct: 120 IGASSTDNFPQESIDHTLDERDNVAGRFSYWSSSGQSNPNVPETLTYHLTSQICVITEIN 179

Query: 181 IQPFQAYFQMGGPIYSAKSVRFKMGHINASLD--------------ASADEKIVWTYTSP 226
           IQPFQA+FQMG PIYSAKSVRFKMGH+ ASLD              A   EK VWTYTSP
Sbjct: 180 IQPFQAHFQMGSPIYSAKSVRFKMGHLKASLDDLAGETIPKKRDNLADESEKYVWTYTSP 239

Query: 227 EFPMTQENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPA 286
           EFPM +EN LQ F LPEPVLCIGGILQ+ELL RVQRQEMDGLLYIC++HVQA+G  LSPA
Sbjct: 240 EFPMAKENRLQKFTLPEPVLCIGGILQIELLERVQRQEMDGLLYICVAHVQALGIQLSPA 299

Query: 287 FSVDILEPSGMFVLKCDR--NYQPPATSEEESGANSTDYMQRGLRDFQQIVTILRGHVIG 344
           F+VD+L PSGMFVLK +   N QP  TSE ES A  TD      R F+QIVTILR  V+G
Sbjct: 300 FTVDVLGPSGMFVLKRNHRPNCQPTVTSENESEAIITD------RHFRQIVTILRAQVMG 353

Query: 345 V 345
           V
Sbjct: 354 V 354


>Medtr6g042460.1 | F-box plant-like protein | LC |
           chr6:14661202-14658162 | 20130731
          Length = 300

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 43/303 (14%)

Query: 1   MSMMECRKDFLSFLDSDMSLKIL--MCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLR 58
           MS  +  +DF+  L  DMS+ +   + L+DP DL+R S VS+SW  +V+ N LCK+ C +
Sbjct: 1   MSEGKNTQDFIQCLGRDMSIDVFNHLNLNDPCDLIRASAVSKSWYQFVVKNGLCKKRCFK 60

Query: 59  IFPQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIA 118
           + P+L  V   +E + + +E   ++    + +W  L+R+H+VYA LA      V  N I 
Sbjct: 61  LLPELIDVVDSIEVD-NIIEPVSDMDGVCA-DWECLKRNHKVYAALAFHLARYVK-NGIT 117

Query: 119 KTIVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTE 178
             I AS + N          E  D                  V E+LTY L S IC++T+
Sbjct: 118 SKIEASYSLN----------ELGD------------------VLESLTYRLCSNICLITK 149

Query: 179 INIQPFQAYFQMGGPIYSAKSVRFKMGHINASLDASADEKIVWTYTSPEFPMTQENELQN 238
           I +QP+QA+ +   P+Y+  +VRF++G +      SA     WTYTSP + + QE   Q 
Sbjct: 150 IRVQPYQAFCEDDSPMYTYSTVRFRIGRVKT---PSA-----WTYTSPHYSILQEKPWQE 201

Query: 239 FKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMF 298
            +LPEP LC GG+L VELLGRV+++       I IS VQ  G   S AF V I   SG +
Sbjct: 202 LELPEPGLCNGGLLLVELLGRVKKK--GSTFEIGISQVQIEGLPTSEAFDVKINHGSGKY 259

Query: 299 VLK 301
            LK
Sbjct: 260 TLK 262


>Medtr0032s0060.1 | F-box plant-like protein | HC |
           scaffold0032:42293-44375 | 20130731
          Length = 185

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 17/114 (14%)

Query: 171 SQICVVTEINIQPFQAYFQMGGPIYSAKSVRFKMG-------------HINASLDASADE 217
           S+  V +  NI P + YFQ G PIYSA+++RF++G             H  AS +   DE
Sbjct: 57  SEAVVASSTNIDPEETYFQDGSPIYSAEAIRFRIGYPRYNRTLESAIAHSIASSNMVVDE 116

Query: 218 -KIVWTYTSPEFPMTQENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLY 270
            + +W Y SP + M QEN LQ FKLP+PVLC   +L VEL GR Q+Q   GLLY
Sbjct: 117 TQFLWIYISPNYQMFQENRLQVFKLPKPVLCNEHVLLVELHGRAQKQ---GLLY 167


>Medtr6g042480.1 | DUF4283 domain protein | LC |
           chr6:14672878-14669959 | 20130731
          Length = 278

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 36/158 (22%)

Query: 43  RHYVIVNSLCKQLCLRIFPQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYA 102
           + +++ N +CK+ C ++ P+++ V   +E +   + E          +W  L+R+H+V  
Sbjct: 141 KDFIVKNGICKKRCFKMLPEITDVVDSIEVDN--ITEPISDMLDVCEDWERLKRNHKVDV 198

Query: 103 YLARSFKSSVSMNCIAKTIVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVP 162
            LA      V  N I K+I  +                       YS+     H   +V 
Sbjct: 199 VLASHLARYVK-NGITKSIEET-----------------------YSF----NHELGDVR 230

Query: 163 ETLTYELASQICVVTEINIQPFQAYFQMGGPIYSAKSV 200
           E++ Y+L S IC++T+I +QP+Q      G  Y AK V
Sbjct: 231 ESINYKLCSNICLITKIRVQPYQ------GEKYLAKDV 262