Miyakogusa Predicted Gene

Lj1g3v2585650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2585650.1 tr|B9N4X2|B9N4X2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_744271 PE=4 SV=1,46.02,7e-16,
,TC77572.path2.1
         (106 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g101490.2 | DUF829 domain protein | HC | chr3:46712213-467...   179   6e-46
Medtr3g101490.1 | DUF829 domain protein | HC | chr3:46712329-467...   179   6e-46
Medtr4g086420.1 | DUF829 domain protein | HC | chr4:33876232-338...    72   2e-13

>Medtr3g101490.2 | DUF829 domain protein | HC |
           chr3:46712213-46716793 | 20130731
          Length = 406

 Score =  179 bits (454), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 96/109 (88%), Gaps = 3/109 (2%)

Query: 1   MRKAAMTSTSFQGFALAPSEHLSHNSMEYYDGKDVSSVADDRKGSFIHLPSRPSINANGV 60
           +RKAA TSTSFQGFA+APSE+LS +SMEYYD KDV SVAD+RKGSFIHLP+RPSINANGV
Sbjct: 298 LRKAATTSTSFQGFAVAPSENLSPSSMEYYDDKDVGSVADERKGSFIHLPTRPSINANGV 357

Query: 61  LGQVLFDVWVPKNVEDWDERS---NPGLLAATRRHVPFNPIKCIRRSRL 106
           LGQ+LFDV VPK VEDWD RS   N GLL+ TRRH PFNPIKCIRRSRL
Sbjct: 358 LGQILFDVCVPKTVEDWDVRSNSKNAGLLSGTRRHAPFNPIKCIRRSRL 406


>Medtr3g101490.1 | DUF829 domain protein | HC |
           chr3:46712329-46716698 | 20130731
          Length = 406

 Score =  179 bits (454), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 96/109 (88%), Gaps = 3/109 (2%)

Query: 1   MRKAAMTSTSFQGFALAPSEHLSHNSMEYYDGKDVSSVADDRKGSFIHLPSRPSINANGV 60
           +RKAA TSTSFQGFA+APSE+LS +SMEYYD KDV SVAD+RKGSFIHLP+RPSINANGV
Sbjct: 298 LRKAATTSTSFQGFAVAPSENLSPSSMEYYDDKDVGSVADERKGSFIHLPTRPSINANGV 357

Query: 61  LGQVLFDVWVPKNVEDWDERS---NPGLLAATRRHVPFNPIKCIRRSRL 106
           LGQ+LFDV VPK VEDWD RS   N GLL+ TRRH PFNPIKCIRRSRL
Sbjct: 358 LGQILFDVCVPKTVEDWDVRSNSKNAGLLSGTRRHAPFNPIKCIRRSRL 406


>Medtr4g086420.1 | DUF829 domain protein | HC |
           chr4:33876232-33871742 | 20130731
          Length = 410

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 3/109 (2%)

Query: 1   MRKAAMTST-SFQGFALAPSEHLSHNSMEYYDGKDVSSVA--DDRKGSFIHLPSRPSINA 57
           ++K A+ S  SF+  A+ PS+H    S   ++  D  SV   D++K   +  PS PSI+A
Sbjct: 302 LQKVAINSNESFRRVAVGPSDHFFLPSSAGHNNNDRESVIPRDEQKEEPVCAPSFPSISA 361

Query: 58  NGVLGQVLFDVWVPKNVEDWDERSNPGLLAATRRHVPFNPIKCIRRSRL 106
           + VLGQ LFDV VPKNVE WD+    G      R  PF  IK I RSRL
Sbjct: 362 HSVLGQFLFDVCVPKNVEGWDDVKFCGNRNGRSRVSPFRGIKRIGRSRL 410