Miyakogusa Predicted Gene

Lj1g3v2570510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2570510.1 Non Characterized Hit- tr|G7KZ77|G7KZ77_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,50,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.29182.1
         (399 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g074290.1 | mediator of RNA polymerase II transcription su...   692   0.0  
Medtr7g074290.2 | mediator of RNA polymerase II transcription su...   691   0.0  
Medtr2g105810.1 | mediator of RNA polymerase II transcription su...   311   5e-85
Medtr2g021400.1 | mediator of RNA polymerase II transcription su...   310   2e-84
Medtr7g094550.1 | mediator of RNA polymerase II transcription su...   285   6e-77
Medtr7g074380.1 | hypothetical protein | HC | chr7:27799525-2780...    99   6e-21

>Medtr7g074290.1 | mediator of RNA polymerase II transcription subunit
            33A | HC | chr7:27762202-27771907 | 20130731
          Length = 1320

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/399 (84%), Positives = 365/399 (91%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGGSQVMLPLPMAALVSLSITFKLD 60
            MNG DWPSPAAVLQSVESEIKAILTHVGV+VP  SSGGS V LPLPMAALVSLSITFKLD
Sbjct: 913  MNGTDWPSPAAVLQSVESEIKAILTHVGVEVPNCSSGGSPVTLPLPMAALVSLSITFKLD 972

Query: 61   KSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV 120
            KSLEYIHAITGAALENCASGCPWPSMP+IGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV
Sbjct: 973  KSLEYIHAITGAALENCASGCPWPSMPVIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV 1032

Query: 121  AQLLRSCFTSYLGTLCVSNSKLTAECNVNGLLGSSITAPGACPYVAPGFLFLRSCRNIHN 180
            AQL+RSCFTS+LG L  SNSKLTAEC+VNGLLGSSITAPGA P+VAPGFL+LRSCR+IHN
Sbjct: 1033 AQLVRSCFTSFLGVLSGSNSKLTAECSVNGLLGSSITAPGAFPFVAPGFLYLRSCRDIHN 1092

Query: 181  VLYLNDVLVGLVTEYSNELAGRRAGPGSRHLKSTGASLSLAAQSAKEVAMLGSCLLCAAG 240
            V YLNDV+VGLVTEYSNELAG RA  GS  LKS  +SL LAAQSAKE+A LG+ LLC+AG
Sbjct: 1093 VQYLNDVIVGLVTEYSNELAGIRASSGSSRLKSNESSLFLAAQSAKEMATLGASLLCSAG 1152

Query: 241  GIQLVQELYKETIPTWLLSSRDTKQNNDSVVSYILEGYAMAYLLIMTGSMIWGVGTKLPS 300
            GIQLVQELYKETIPTWLLSSRD K+ ND+V+SYILEGYA+AYLL  +GS++WGVGTKLPS
Sbjct: 1153 GIQLVQELYKETIPTWLLSSRDVKRKNDNVMSYILEGYAIAYLLTFSGSILWGVGTKLPS 1212

Query: 301  STSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRLMVSLAPAWVQDVKVDT 360
               +RRN  I VHLDFLAEVMERKIS+SCNPITWKTYVCCLV LMVS APAW+Q++KVD+
Sbjct: 1213 PKLSRRNHTIGVHLDFLAEVMERKISLSCNPITWKTYVCCLVGLMVSFAPAWLQEMKVDS 1272

Query: 361  LRKLARGLSRWNEHELALSLLQRGRTAAMGALAELVNMI 399
            LRKLA GLSRWNEHELALSLLQRG TAAMGALAEL+N+I
Sbjct: 1273 LRKLAHGLSRWNEHELALSLLQRGGTAAMGALAELINVI 1311


>Medtr7g074290.2 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr7:27762202-27771866 | 20130731
          Length = 992

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/399 (84%), Positives = 365/399 (91%)

Query: 1   MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGGSQVMLPLPMAALVSLSITFKLD 60
           MNG DWPSPAAVLQSVESEIKAILTHVGV+VP  SSGGS V LPLPMAALVSLSITFKLD
Sbjct: 585 MNGTDWPSPAAVLQSVESEIKAILTHVGVEVPNCSSGGSPVTLPLPMAALVSLSITFKLD 644

Query: 61  KSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV 120
           KSLEYIHAITGAALENCASGCPWPSMP+IGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV
Sbjct: 645 KSLEYIHAITGAALENCASGCPWPSMPVIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESV 704

Query: 121 AQLLRSCFTSYLGTLCVSNSKLTAECNVNGLLGSSITAPGACPYVAPGFLFLRSCRNIHN 180
           AQL+RSCFTS+LG L  SNSKLTAEC+VNGLLGSSITAPGA P+VAPGFL+LRSCR+IHN
Sbjct: 705 AQLVRSCFTSFLGVLSGSNSKLTAECSVNGLLGSSITAPGAFPFVAPGFLYLRSCRDIHN 764

Query: 181 VLYLNDVLVGLVTEYSNELAGRRAGPGSRHLKSTGASLSLAAQSAKEVAMLGSCLLCAAG 240
           V YLNDV+VGLVTEYSNELAG RA  GS  LKS  +SL LAAQSAKE+A LG+ LLC+AG
Sbjct: 765 VQYLNDVIVGLVTEYSNELAGIRASSGSSRLKSNESSLFLAAQSAKEMATLGASLLCSAG 824

Query: 241 GIQLVQELYKETIPTWLLSSRDTKQNNDSVVSYILEGYAMAYLLIMTGSMIWGVGTKLPS 300
           GIQLVQELYKETIPTWLLSSRD K+ ND+V+SYILEGYA+AYLL  +GS++WGVGTKLPS
Sbjct: 825 GIQLVQELYKETIPTWLLSSRDVKRKNDNVMSYILEGYAIAYLLTFSGSILWGVGTKLPS 884

Query: 301 STSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRLMVSLAPAWVQDVKVDT 360
              +RRN  I VHLDFLAEVMERKIS+SCNPITWKTYVCCLV LMVS APAW+Q++KVD+
Sbjct: 885 PKLSRRNHTIGVHLDFLAEVMERKISLSCNPITWKTYVCCLVGLMVSFAPAWLQEMKVDS 944

Query: 361 LRKLARGLSRWNEHELALSLLQRGRTAAMGALAELVNMI 399
           LRKLA GLSRWNEHELALSLLQRG TAAMGALAEL+N+I
Sbjct: 945 LRKLAHGLSRWNEHELALSLLQRGGTAAMGALAELINVI 983


>Medtr2g105810.1 | mediator of RNA polymerase II transcription subunit
            33A | HC | chr2:45673309-45664907 | 20130731
          Length = 1316

 Score =  311 bits (798), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/411 (41%), Positives = 248/411 (60%), Gaps = 22/411 (5%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYS-SGGSQVMLPLPMAALVSLSITFKL 59
            MNG DWPSPAA L  VE +IK IL   GVDVP  +  G +   LPLP+AA +SL+IT+KL
Sbjct: 908  MNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAAFLSLTITYKL 967

Query: 60   DKSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNES 119
            DKS E    + G ++ N ++GCPWP MPI+GSLWAQKV+RW +F V S SR+VF H+ ++
Sbjct: 968  DKSSERFLVLIGPSMINLSAGCPWPCMPIVGSLWAQKVKRWSDFFVFSASRTVFHHSRDA 1027

Query: 120  VAQLLRSCFTSY--LGTLCVSNSKLTAECNVNGLLGSSITAP--GACPYVAPGFLFLRSC 175
            V QLL+SCFTS   LG+ C+ N+       V  LLG    +   G    VAPG L+LR  
Sbjct: 1028 VVQLLKSCFTSTLGLGSACIYNNG-----GVGALLGHGFGSHFLGGISPVAPGILYLRVY 1082

Query: 176  RNIHNVLYLNDVLVGLVTEYSNELAGRRAGPGSRH--------LKSTGASLSLAAQSAKE 227
            R+I + ++L + +V L+     ++A      G  H        ++    SL+ +    K 
Sbjct: 1083 RSIRDAMFLTEEIVSLLMLSVRDIASGGLPNGEAHKPKMTKYGMRYGQVSLAASMTRVKH 1142

Query: 228  VAMLGSCLLCAAGGIQLVQELYKETIPTWLLSSRDTKQN--NDSVVSYILEGYAMAYLLI 285
             A+LG+  L  +GG  L+Q L  ET+P+W LS+   +Q      VV  IL GYA+A   +
Sbjct: 1143 AALLGASFLWISGGSSLIQSLITETLPSWFLSAPGLEQEVGESGVVVAILRGYALACFAV 1202

Query: 286  MTGSMIWGVGTKLPSSTSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRLM 345
            ++G+  WG+ +   S+ S RR  II +HL+FLA  ++ KIS+ C+  TW+ YV   + LM
Sbjct: 1203 LSGTFAWGIDSL--SAASKRRPKIIGIHLEFLANALDGKISLRCDCATWRAYVSGFMSLM 1260

Query: 346  VSLAPAWVQDVKVDTLRKLARGLSRWNEHELALSLLQRGRTAAMGALAELV 396
            VS  P W++++ VD L+++++GL + NE  LAL LL+    + MG +AE++
Sbjct: 1261 VSCTPLWIEELDVDMLKRVSKGLRQMNEDGLALQLLEIRGKSLMGEVAEMI 1311


>Medtr2g021400.1 | mediator of RNA polymerase II transcription subunit
            33A | HC | chr2:7282174-7290385 | 20130731
          Length = 1319

 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/410 (42%), Positives = 256/410 (62%), Gaps = 21/410 (5%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGGSQ-VMLPLPMAALVSLSITFKL 59
            MNG DWPSPAA LQ+VE +IK IL   GVDVP  +SG S    LPLP+AA  SL+IT+K+
Sbjct: 912  MNGTDWPSPAANLQNVEEQIKKILAETGVDVPSLASGDSSPATLPLPLAAFTSLTITYKV 971

Query: 60   DKSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNES 119
            D+S E    + G  LE  A+GCPWP MPI+ SLW QK +RW +F++ S SR+VF HN+++
Sbjct: 972  DRSSERFLHLAGQTLEGLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHNSDA 1031

Query: 120  VAQLLRSCFTSYLGTLCVSNSKLTAECNVNGLLGSSITAP---GACPYVAPGFLFLRSCR 176
            V QL++ CFT+   TL +S+S +++   V  LLG    +    G CP VAPG L+LR+ R
Sbjct: 1032 VVQLVKRCFTA---TLGMSSSPISSSGGVGALLGHGFKSNLCGGICP-VAPGILYLRAYR 1087

Query: 177  NIHNVLYLNDVLVGLVTEYSNELA-GRRAGPGSRHLKSTG-------ASLSLAAQSAKEV 228
            ++ ++++L + +V ++ +   E+  G       + LK T         S++ +    K  
Sbjct: 1088 SVRDIVFLTEEIVSILMQSVREIVCGVLPKQRLKKLKLTKDGIKYGQVSVAASMTRVKLA 1147

Query: 229  AMLGSCLLCAAGGIQLVQELYKETIPTWLLSSR--DTKQNNDSVVSYILEGYAMAYLLIM 286
            A LG+ L+  +GG+ LVQ L  ET+P+W +S +  D ++ ++ +V+ +L GY +AY  ++
Sbjct: 1148 AALGASLVWISGGLTLVQLLINETLPSWFISVQRSDQEEKSNGMVA-MLGGYGLAYFAVL 1206

Query: 287  TGSMIWGVGTKLPSSTSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRLMV 346
             G+  WGV +   SS S RR  ++  H++FLA  ++ KIS+ C+P TW+ YV   V LMV
Sbjct: 1207 CGAFAWGVDSS--SSASKRRPKVLGTHMEFLASALDGKISLGCDPATWRAYVSGFVSLMV 1264

Query: 347  SLAPAWVQDVKVDTLRKLARGLSRWNEHELALSLLQRGRTAAMGALAELV 396
               P WV +V V+ L++L+ GL + NE ELAL+LL  G    MGA AEL+
Sbjct: 1265 GCIPNWVLEVDVNVLKRLSNGLRQLNEEELALALLGVGGVGTMGAAAELI 1314


>Medtr7g094550.1 | mediator of RNA polymerase II transcription subunit
            33A | HC | chr7:37640277-37651980 | 20130731
          Length = 1338

 Score =  285 bits (729), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 236/412 (57%), Gaps = 27/412 (6%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGGS-QVMLPLPMAALVSLSITFKL 59
            MNG DWPSPAA L  VE  IK IL   GVDVP  +        LPLP+AA VSLSIT+KL
Sbjct: 931  MNGTDWPSPAANLSLVEQHIKKILAATGVDVPSLAIDEEYPATLPLPLAAFVSLSITYKL 990

Query: 60   DKSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNES 119
            DK       + G  L   AS C WP MPI+ SLW QKV+RW ++ ++  S +VF HN ++
Sbjct: 991  DKGKGRFLLLIGPTLNAVASVCVWPCMPILTSLWIQKVKRWRDYFLLRASGTVFHHNKDA 1050

Query: 120  VAQLLRSCFTSY--LGTLCVSNSKLTAECNVNGLLGSSITAPGACPYVAPGFLFLRSCRN 177
            V QLL+SCFTS   LG+ C++N+       V  LLG  + +      VAPG L+LR  R 
Sbjct: 1051 VVQLLKSCFTSTLGLGSTCMNNNG-----GVGALLGHGLASHSP---VAPGILYLRVYRF 1102

Query: 178  IHNVLYLNDVLVGLVTEYSNELAGRRAGPGSR----------HLKSTGASLSLAAQSAKE 227
            I ++++LN  ++ ++     ++A     P              +K    SL       K+
Sbjct: 1103 IGDIMFLNKAIMSILLLSVRDIASSDELPKGDVKKQLNKIKYGMKRGQVSLVRYMARVKQ 1162

Query: 228  VAMLGSCLLCAAGGIQLVQELYKETIPTWLLSSRDTKQNND---SVVSYILEGYAMAYLL 284
             A+LG+ L+  +GG +LVQ L + T+P+W LS+ DT +  D    V+  +L GYA+AY +
Sbjct: 1163 AALLGASLVWISGGQKLVQSLIRGTVPSWFLSA-DTLEQEDGETGVLVAMLSGYALAYFV 1221

Query: 285  IMTGSMIWGVGTKLPSSTSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRL 344
            +++ +  WG+     S    RR  +I +HLDFLA+ MER  ++SC+  TW+ YV   V L
Sbjct: 1222 MLSVAFAWGIDHS--SVPPNRRAKVIAIHLDFLADTMERFTTLSCHHATWQAYVSGFVSL 1279

Query: 345  MVSLAPAWVQDVKVDTLRKLARGLSRWNEHELALSLLQRGRTAAMGALAELV 396
            +V   P W+++V  + L++L++GL + NE ELAL LL+ G    MG  AE++
Sbjct: 1280 IVCCTPMWIREVDAELLKRLSKGLRQLNEDELALRLLEIGGIGVMGTAAEMI 1331


>Medtr7g074380.1 | hypothetical protein | HC |
           chr7:27799525-27802090 | 20130731
          Length = 225

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 64/110 (58%), Gaps = 29/110 (26%)

Query: 155 SITAPGACPYVAPGFLFLRSCRNIHNVLYLNDVLVGLVTEYSNELAGRRAGPGSRHLKST 214
           S+T PG  P+V                             Y+NELAGRRA  GS  LKS 
Sbjct: 130 SVTDPGTIPFV-----------------------------YANELAGRRANSGSSRLKSK 160

Query: 215 GASLSLAAQSAKEVAMLGSCLLCAAGGIQLVQELYKETIPTWLLSSRDTK 264
            AS+SLA +SAKE+A LG+ LLCA G IQLVQ++YKETI TWLLSS D K
Sbjct: 161 EASISLAVKSAKEIATLGASLLCATGDIQLVQKMYKETITTWLLSSTDMK 210