Miyakogusa Predicted Gene

Lj1g3v2546300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2546300.1 tr|G7KY88|G7KY88_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_7g074140 PE=4 SV=1,84.51,0,seg,NULL;
RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type, conserved site;
zf-RING_2,Zinc finger, ,CUFF.29148.1
         (444 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein ...   604   e-173
Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein ...   471   e-133
Medtr3g093660.1 | RING zinc finger protein, putative | HC | chr3...   247   2e-65
Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC | chr...    69   6e-12
Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC | chr...    69   7e-12
Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like pr...    64   4e-10
Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like pr...    64   4e-10
Medtr3g110190.1 | RING-H2 finger protein ATL4J | HC | chr3:51190...    57   5e-08
Medtr4g015600.2 | zinc finger, C3HC4 type (RING finger) protein ...    51   3e-06
Medtr4g015600.1 | zinc finger, C3HC4 type (RING finger) protein ...    51   3e-06
Medtr3g100400.1 | anaphase-promoting complex subunit 11 RING-H2 ...    50   4e-06
Medtr7g068290.1 | zinc finger, C3HC4 type (RING finger) protein ...    50   4e-06

>Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:27693298-27698469 | 20130731
          Length = 426

 Score =  604 bits (1558), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/421 (73%), Positives = 325/421 (77%), Gaps = 10/421 (2%)

Query: 28  RRFGLLSASNIIQAPLSLLLEYSGILPPRSNQ-HQPNSDVAAAPSDGEVSIRIIGSAEHD 86
           RR+G  SA++IIQAPLS LLEYSGILP RSNQ HQP  D  +AP+DGEVSIRIIGS E D
Sbjct: 12  RRYGFPSAASIIQAPLSALLEYSGILPARSNQQHQPIPD--SAPNDGEVSIRIIGSNEQD 69

Query: 87  HQRREEQT---LSDGDLAVGNDAVDPSQGGDADXXXXXXXXXXXXXXXXXXXXXXXXXXX 143
           + R E+ +   ++DG  A      + S+ GD +                           
Sbjct: 70  NHRDEQGSPLVVNDGGGAAA--MTNSSEHGDVEGVLRTGSGNVDAESGGGGGGGDVGANG 127

Query: 144 XXXDSSYQRYDIQHAARWIEQXXXXXXXXXXXXIRQHLQGFFVTIWIAVVLFKSNDILRK 203
              DSSYQRYDIQHAARWIEQ            IRQHLQGFFVTIWIA VLFKSNDILRK
Sbjct: 128 R--DSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRK 185

Query: 204 QTALKGERKVPVLIGFSVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMV 263
           QTALKGERK+PVLIG SVAF LHVV VYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMV
Sbjct: 186 QTALKGERKMPVLIGISVAFTLHVVSVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMV 245

Query: 264 NDTLVRQAAMVFKCILLIYYKNSRGRNYRKQGQMXXXXXXXXXXXXXXXXXXXWYRFFLN 323
           NDTL RQAAMV KCILL+YYKNSRGRNYRKQGQM                   WYRFFLN
Sbjct: 246 NDTLARQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLN 305

Query: 324 KEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGDLC 383
           KEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQV AAGDLC
Sbjct: 306 KEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVIAAGDLC 365

Query: 384 AICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQL 443
           AICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQL
Sbjct: 366 AICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQL 425

Query: 444 F 444
           F
Sbjct: 426 F 426


>Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:28979430-28987791 | 20130731
          Length = 481

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/445 (54%), Positives = 286/445 (64%), Gaps = 31/445 (6%)

Query: 30  FGLLSASNIIQAPLSLLLEYSGILPPRSNQH-------------QPNSDVAAA---PSDG 73
           +G+    N   +P+S LL+YSGIL   ++               +P  D   A    S G
Sbjct: 38  YGMRLPVNPFLSPISFLLDYSGILRSGNDSEGMIVNNGVSGSELRPQVDAGGAVAGSSAG 97

Query: 74  EVSIRIIGSAEHDHQRREEQTLSD----------GDLAVGNDAVDPSQGGDADXXXXXXX 123
           EV+IRIIG+ E+ H +  E    D          G   +G +  +   G +A        
Sbjct: 98  EVAIRIIGAGENIHNQVGEVGYDDCGEELIAERSGMPGLGENDAEGRGGIEASEGVPLVS 157

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXD----SSYQRYDIQHAARWIEQXXXXXXXXXXXXIRQ 179
                                  +    SSYQRYDIQ  A+WIEQ            IRQ
Sbjct: 158 SSSSSSLAGSGQVDGEAAGNGTENNRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQ 217

Query: 180 HLQGFFVTIWIAVVLFKSNDILRKQTALKGERKVPVLIGFSVAFALHVVGVYWWYQNDDL 239
           HLQGFFVTIWIA V+FKSN+I++KQTALKG+RKV +L G + AF LHV+ +YWWY+NDD+
Sbjct: 218 HLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICIYWWYRNDDI 277

Query: 240 MYPLVMLPPKEIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRKQGQMXX 299
           +YPL MLPP    PFWHAIF I+VND L+RQ AM FKCILLIYYK  +G N+R+Q QM  
Sbjct: 278 LYPLAMLPPNP-TPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLT 336

Query: 300 XXXXXXXXXXXXXXXXXWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKA 359
                            WYRFFLN+EYGSLFSSL TGLYLTFKLTSVVEKVQ F +A+KA
Sbjct: 337 LVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKA 396

Query: 360 LSRKEVHYGAHATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPL 419
           LSRKEVHYG +AT+EQV AAGDLCAICQEKMH+PILLRCKHIFCEDCVSEWFERERTCPL
Sbjct: 397 LSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPL 456

Query: 420 CRALVKPADLRSFGDGSTSLFFQLF 444
           CRALVK ADLR+FGDGSTSLFFQLF
Sbjct: 457 CRALVKAADLRTFGDGSTSLFFQLF 481


>Medtr3g093660.1 | RING zinc finger protein, putative | HC |
           chr3:42800974-42797203 | 20130731
          Length = 302

 Score =  247 bits (630), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 155/230 (67%)

Query: 148 SSYQRYDIQHAARWIEQXXXXXXXXXXXXIRQHLQGFFVTIWIAVVLFKSNDILRKQTAL 207
           S+Y  +D Q  A+ ++Q            IR+H++ FFVTI    V+F+SN++++KQTAL
Sbjct: 57  STYSWFDFQQIAKMVDQILPFSLLLLIVLIRRHMEYFFVTIGAIAVMFRSNELVKKQTAL 116

Query: 208 KGERKVPVLIGFSVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTL 267
           KG+RKV  L+G S +F L+V+ +Y  Y NDD+++PL M PP+  P FW AIFII+VNDT+
Sbjct: 117 KGDRKVSALLGLSFSFMLYVICIYQLYGNDDVLFPLAMFPPETTPSFWKAIFIILVNDTM 176

Query: 268 VRQAAMVFKCILLIYYKNSRGRNYRKQGQMXXXXXXXXXXXXXXXXXXXWYRFFLNKEYG 327
           VRQ AM FKC+LLIYYKN RG N+R QGQM                   WYRFF   ++G
Sbjct: 177 VRQVAMAFKCLLLIYYKNGRGHNFRHQGQMLTLVEYTLLLYRAFLPAPVWYRFFFYMDFG 236

Query: 328 SLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVN 377
           SLFSS++TGLYLTFKLTS V+KV     A+KALS  E+HYG +AT EQVN
Sbjct: 237 SLFSSIITGLYLTFKLTSAVDKVTCVLFALKALSEDEIHYGVYATPEQVN 286


>Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1474618 | 20130731
          Length = 539

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           ATSE++NA+   C IC+E+M A   L C H+F   C+  W ER+ TCP CRALV P +
Sbjct: 280 ATSEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337


>Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1473344 | 20130731
          Length = 422

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           ATSE++NA+   C IC+E+M A   L C H+F   C+  W ER+ TCP CRALV P +
Sbjct: 280 ATSEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337


>Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29784602 | 20130731
          Length = 522

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++N+    C IC+E+M     L C H+F   C+  W ER+ TCP CRALV P++
Sbjct: 280 ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337


>Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29783780 | 20130731
          Length = 495

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++N+    C IC+E+M     L C H+F   C+  W ER+ TCP CRALV P++
Sbjct: 280 ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337


>Medtr3g110190.1 | RING-H2 finger protein ATL4J | HC |
           chr3:51190946-51189912 | 20130731
          Length = 344

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 380 GDLCAICQEKMHAPILLR----CKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDG 435
           G  C +C  K     +LR    CKH F  +C+ +W E   TCPLCR +V+ +D+R+F   
Sbjct: 89  GLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYMVEESDIRNFTFS 148

Query: 436 STSLFFQL 443
            +S F ++
Sbjct: 149 FSSRFLRV 156


>Medtr4g015600.2 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr4:4686907-4682267 | 20130731
          Length = 196

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 322 LNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGD 381
           L + YG +F SL   L L   +T V E+ Q    A K   +  +  G    SE      +
Sbjct: 42  LKEFYGVIFPSL---LQLQRGITDVEERKQKDLCATKYKPKDVI--GKGKLSEIDLEREE 96

Query: 382 LCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVK 425
            C IC E  +  +L  C H  C  C ++W  R ++CP CR  +K
Sbjct: 97  ECPICMEMNNKVVLPNCYHSLCMRCYNDWHTRSQSCPFCRDSLK 140


>Medtr4g015600.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr4:4686907-4682267 | 20130731
          Length = 249

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 322 LNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGD 381
           L + YG +F SL   L L   +T V E+ Q    A K   +  +  G    SE      +
Sbjct: 95  LKEFYGVIFPSL---LQLQRGITDVEERKQKDLCATKYKPKDVI--GKGKLSEIDLEREE 149

Query: 382 LCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVK 425
            C IC E  +  +L  C H  C  C ++W  R ++CP CR  +K
Sbjct: 150 ECPICMEMNNKVVLPNCYHSLCMRCYNDWHTRSQSCPFCRDSLK 193


>Medtr3g100400.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr3:46169451-46168093 | 20130731
          Length = 411

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 383 CAICQEKMHAPILLR----CKHIFCEDCVSEWFERERTCPLCRALVKPADL 429
           CA+C  K  +  +LR    CKH F  +CV  W +   TCPLCR  V P D+
Sbjct: 156 CAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDI 206


>Medtr7g068290.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:24968493-24965480 | 20130731
          Length = 245

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 322 LNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGD 381
           L + YG +F SL   L L   +T V ++ Q    A K   ++ V  G  ++   V    +
Sbjct: 90  LKEFYGVVFPSL---LQLHRGITDVEDRKQKLLCATKYKPKELVDKGK-SSEIDVEKEEE 145

Query: 382 LCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVK 425
            C IC E     +L  C H  C  C  +W  R  +CP CR  +K
Sbjct: 146 ECDICMEITSIVVLPNCNHSMCIKCYRDWHARSESCPFCRDSLK 189