Miyakogusa Predicted Gene

Lj1g3v2536080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2536080.1 tr|B9H5T2|B9H5T2_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_207971
PE=4,84.65,0,4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE,NULL;
PRENYLTRANSFERASES,NULL; seg,NULL; UbiA,UbiA prenyltra,CUFF.29117.1
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g073970.1 | 4-hydroxybenzoate polyprenyltransferase | HC |...   318   3e-87
Medtr3g111660.1 | UbiA family prenyltransferase | HC | chr3:5221...   192   3e-49

>Medtr7g073970.1 | 4-hydroxybenzoate polyprenyltransferase | HC |
           chr7:27603078-27606912 | 20130731
          Length = 400

 Score =  318 bits (814), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 170/215 (79%)

Query: 2   QVERTKSRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNYSRVLGASSLFLVFSYPLMK 61
           +VERTK RPVASG+LTP                     NNYSRVLGASSL LVFSYPLMK
Sbjct: 186 KVERTKLRPVASGILTPFQGLSFLGFQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMK 245

Query: 62  RFTFWPQAYLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDD 121
           RFTFWPQA+LGLTFNWGALLGWAAIKG+LD SIVLPLYASGV WTLVYDTIYAHQDKEDD
Sbjct: 246 RFTFWPQAFLGLTFNWGALLGWAAIKGNLDSSIVLPLYASGVCWTLVYDTIYAHQDKEDD 305

Query: 122 LKVGVKSTALRFGDLTKQWITGFGFACLGNLALSGFNAELGWPYYACLAAASGHLGWQVW 181
           LKVGVKSTALRFGD TK+W+TGFG A L  LALSGFNAELGWPYYA L  ASGHLGWQ+W
Sbjct: 306 LKVGVKSTALRFGDSTKEWLTGFGIASLSGLALSGFNAELGWPYYAFLGVASGHLGWQIW 365

Query: 182 TVDLSSRADCNRKFVSNKWXXXXXXXXXXXXRLSS 216
           TVDLSSR+DCNRKFVSNKW            RLSS
Sbjct: 366 TVDLSSRSDCNRKFVSNKWYGAIIFGGILAGRLSS 400


>Medtr3g111660.1 | UbiA family prenyltransferase | HC |
           chr3:52211240-52208196 | 20130731
          Length = 303

 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 99/110 (90%)

Query: 67  PQAYLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDLKVGV 126
           PQA+LGLTFNWGALLGWAA+KG+LDPS VLPLYASGV WTLVYDTIYAHQDK+DDLKVGV
Sbjct: 194 PQAFLGLTFNWGALLGWAAVKGNLDPSNVLPLYASGVCWTLVYDTIYAHQDKDDDLKVGV 253

Query: 127 KSTALRFGDLTKQWITGFGFACLGNLALSGFNAELGWPYYACLAAASGHL 176
           KSTALRFGD TK+W+TGFG A L  LALSG NAELGWPYYA L  ASGH+
Sbjct: 254 KSTALRFGDSTKEWLTGFGIASLSGLALSGLNAELGWPYYAVLGVASGHI 303