Miyakogusa Predicted Gene
- Lj1g3v2535040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2535040.1 Non Characterized Hit- tr|I1L6X1|I1L6X1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8009
PE=,87.46,0,seg,NULL; K homology RNA-binding domain,K Homology domain;
Eukaryotic type KH-domain (KH-domain
type,NODE_42273_length_1107_cov_70.825653.path1.1
(287 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g074100.1 | RNA-binding KH domain protein | HC | chr7:2767... 456 e-128
Medtr8g006605.1 | RNA-binding KH domain protein | HC | chr8:7443... 413 e-115
Medtr8g006580.1 | RNA-binding KH domain protein | HC | chr8:7074... 413 e-115
Medtr8g005550.1 | RNA-binding KH domain protein | HC | chr8:2306... 413 e-115
Medtr8g005430.1 | RNA-binding KH domain protein | HC | chr8:8684... 405 e-113
Medtr5g075710.1 | RNA-binding KH domain protein | HC | chr5:3222... 326 2e-89
Medtr5g075710.3 | RNA-binding KH domain protein | HC | chr5:3222... 314 6e-86
Medtr5g075710.2 | RNA-binding KH domain protein | HC | chr5:3222... 302 3e-82
Medtr3g062640.1 | RNA-binding KH domain protein | HC | chr3:2830... 298 4e-81
Medtr3g010220.1 | RNA-binding KH domain protein | HC | chr3:2351... 263 2e-70
Medtr2g005590.2 | RNA-binding KH domain protein | HC | chr2:2238... 237 1e-62
Medtr2g005590.3 | RNA-binding KH domain protein | HC | chr2:2237... 233 2e-61
Medtr2g005590.1 | RNA-binding KH domain protein | HC | chr2:2237... 233 2e-61
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 101 1e-21
Medtr3g078050.1 | hypothetical protein | LC | chr3:35166985-3516... 69 8e-12
Medtr3g083770.1 | RNA-binding KH domain protein | HC | chr3:3779... 49 4e-06
Medtr3g083770.2 | RNA-binding KH domain protein | HC | chr3:3779... 49 4e-06
>Medtr7g074100.1 | RNA-binding KH domain protein | HC |
chr7:27677743-27671597 | 20130731
Length = 281
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/287 (79%), Positives = 244/287 (85%), Gaps = 6/287 (2%)
Query: 1 MSGLYNPNFSPSPVRXXXXXXQIRGTPSSEMDSQYLSELLAERQKLGPFMQVLPTCNRLL 60
MSGLYN NFS QIR PSSE+DSQYLSELLAE QKLGPF+QVLP C+RLL
Sbjct: 1 MSGLYNQNFS----HARAASPQIR--PSSEVDSQYLSELLAEHQKLGPFLQVLPICSRLL 54
Query: 61 NQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPG 120
NQEILRVSGMLSNQGFGDFDRL+HRSPSPMA SNLMSNV GTG+G WN LQQERLCG PG
Sbjct: 55 NQEILRVSGMLSNQGFGDFDRLQHRSPSPMASSNLMSNVSGTGMGAWNSLQQERLCGPPG 114
Query: 121 MTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFI 180
M MDWQ APASP+S+TV+RILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRV+I
Sbjct: 115 MNMDWQSAPASPSSFTVKRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 174
Query: 181 RGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD 240
RG GSIKDP+KE+KLRG+PGYEHL E LHILIEADLPAN+VDIRLRQAQEIIEELLKPVD
Sbjct: 175 RGKGSIKDPEKEDKLRGRPGYEHLNENLHILIEADLPANVVDIRLRQAQEIIEELLKPVD 234
Query: 241 ESQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
ESQD++K+QQLRELALLNSN REE MKRAK GR
Sbjct: 235 ESQDFIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKPGR 281
>Medtr8g006605.1 | RNA-binding KH domain protein | HC |
chr8:744315-740918 | 20130731
Length = 276
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/286 (77%), Positives = 241/286 (84%), Gaps = 15/286 (5%)
Query: 3 GLYNPNFSPSPVRXXXXXXQIRGTPSSEM-DSQYLSELLAERQKLGPFMQVLPTCNRLLN 61
GLYNPNFS SPVR QIR P+S++ DSQYLSELLAE QKLGPF+++LP +RLLN
Sbjct: 5 GLYNPNFS-SPVRAASP--QIR--PNSDIIDSQYLSELLAEYQKLGPFIKILPNSSRLLN 59
Query: 62 QEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGM 121
QEILRVSGMLSNQGF DFDRLRHRSPSP++ SNL GWN LQ ERLCGTPGM
Sbjct: 60 QEILRVSGMLSNQGFADFDRLRHRSPSPLSSSNLT---------GWNNLQHERLCGTPGM 110
Query: 122 TMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 181
TMDWQ APASP+SYTV+RILRLEIPVDT+PNFNFVGRLLGPRGNSLKRVEATTGCRVFIR
Sbjct: 111 TMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 170
Query: 182 GTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 241
G GSIKDPDKEEKLRG+PGYEHL EPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDE
Sbjct: 171 GKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDE 230
Query: 242 SQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
S+D++K+QQLRELALLNSNLREE MKRAKTGR
Sbjct: 231 SEDFIKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 276
>Medtr8g006580.1 | RNA-binding KH domain protein | HC |
chr8:707473-703207 | 20130731
Length = 276
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/286 (77%), Positives = 241/286 (84%), Gaps = 15/286 (5%)
Query: 3 GLYNPNFSPSPVRXXXXXXQIRGTPSSEM-DSQYLSELLAERQKLGPFMQVLPTCNRLLN 61
GLYNPNFS SPVR QIR P+S++ DSQYLSELLAE QKLGPF+++LP +RLLN
Sbjct: 5 GLYNPNFS-SPVRAASP--QIR--PNSDIIDSQYLSELLAEYQKLGPFIKILPNSSRLLN 59
Query: 62 QEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGM 121
QEILRVSGMLSNQGF DFDRLRHRSPSP++ SNL GWN LQ ERLCGTPGM
Sbjct: 60 QEILRVSGMLSNQGFADFDRLRHRSPSPLSSSNLT---------GWNNLQHERLCGTPGM 110
Query: 122 TMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 181
TMDWQ APASP+SYTV+RILRLEIPVDT+PNFNFVGRLLGPRGNSLKRVEATTGCRVFIR
Sbjct: 111 TMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 170
Query: 182 GTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 241
G GSIKDPDKEEKLRG+PGYEHL EPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDE
Sbjct: 171 GKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDE 230
Query: 242 SQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
S+D++K+QQLRELALLNSNLREE MKRAKTGR
Sbjct: 231 SEDFIKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 276
>Medtr8g005550.1 | RNA-binding KH domain protein | HC |
chr8:230618-227384 | 20130731
Length = 276
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/286 (77%), Positives = 241/286 (84%), Gaps = 15/286 (5%)
Query: 3 GLYNPNFSPSPVRXXXXXXQIRGTPSSEM-DSQYLSELLAERQKLGPFMQVLPTCNRLLN 61
GLYNPNFS SPVR QIR P+S++ DSQYLSELLAE QKLGPF+++LP +RLLN
Sbjct: 5 GLYNPNFS-SPVRAASP--QIR--PNSDIIDSQYLSELLAEYQKLGPFIKILPNSSRLLN 59
Query: 62 QEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGM 121
QEILRVSGMLSNQGF DFDRLRHRSPSP++ SNL GWN LQ ERLCGTPGM
Sbjct: 60 QEILRVSGMLSNQGFADFDRLRHRSPSPLSSSNLT---------GWNNLQHERLCGTPGM 110
Query: 122 TMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 181
TMDWQ APASP+SYTV+RILRLEIPVDT+PNFNFVGRLLGPRGNSLKRVEATTGCRVFIR
Sbjct: 111 TMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 170
Query: 182 GTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 241
G GSIKDPDKEEKLRG+PGYEHL EPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDE
Sbjct: 171 GKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDE 230
Query: 242 SQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
S+D++K+QQLRELALLNSNLREE MKRAKTGR
Sbjct: 231 SEDFIKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 276
>Medtr8g005430.1 | RNA-binding KH domain protein | HC |
chr8:868473-864902 | 20130731
Length = 275
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/286 (76%), Positives = 240/286 (83%), Gaps = 16/286 (5%)
Query: 3 GLYNPNFSPSPVRXXXXXXQIRGTPSSEM-DSQYLSELLAERQKLGPFMQVLPTCNRLLN 61
GLYNPNFS SPVR QIR P+S++ DSQYLSELLAE QKLGPF+++LP +RLLN
Sbjct: 5 GLYNPNFS-SPVRAASP--QIR--PNSDIIDSQYLSELLAEYQKLGPFIKILPNSSRLLN 59
Query: 62 QEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGM 121
QEILRVSGMLSNQGF DFDRLRHRSPSP++ SNL GWN LQ ERLCGTPGM
Sbjct: 60 QEILRVSGMLSNQGFADFDRLRHRSPSPLSSSNLT---------GWNNLQHERLCGTPGM 110
Query: 122 TMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 181
TMDWQ APASP+SYTV+RILRLEIPVDT+PNFNFVGRLLGPRGNSLKRVEATTGCRVFIR
Sbjct: 111 TMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 170
Query: 182 GTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 241
G GSIKDPD +EKLRG+PGYEHL EPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDE
Sbjct: 171 GKGSIKDPD-QEKLRGRPGYEHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDE 229
Query: 242 SQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
S+D++K+QQLRELALLNSNLREE MKRAKTGR
Sbjct: 230 SEDFIKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 275
>Medtr5g075710.1 | RNA-binding KH domain protein | HC |
chr5:32222823-32219192 | 20130731
Length = 281
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 177/290 (61%), Positives = 205/290 (70%), Gaps = 16/290 (5%)
Query: 1 MSGLYNPNFSPSPVRXXXXXXQIRGTPSSEMDSQYLSELLAERQKLGPFMQVLPTCNRLL 60
MSGLYN S SP I + ++DSQYL+EL+AE QKLGPFMQVLP C RLL
Sbjct: 1 MSGLYNNQIS-SPGTARANSPNINMRSNFDVDSQYLTELVAEYQKLGPFMQVLPLCTRLL 59
Query: 61 NQEILRVSG---MLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTG-LGGWNGLQQERLC 116
NQEILR SG ++ NQGF D+DR++ S P +LM ++ T GWN L E
Sbjct: 60 NQEILRASGKSGLMQNQGFSDYDRVQFGSTKP----SLMPSLDTTSSFTGWNSLSHE--- 112
Query: 117 GTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGC 176
G+ +DWQ APA S+ V+++LRL+IP D P FNFVGRLLGPRGNSLKRVEATTGC
Sbjct: 113 ---GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGC 169
Query: 177 RVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELL 236
RVFIRG GSIKD DKEE LRG+PG+EHL EPLHILIEA+LP N+VD+RLRQAQEIIEELL
Sbjct: 170 RVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELL 229
Query: 237 KPVDESQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXM-KRAKT 285
KPVDESQD K+QQLRELA+LNS+ REE M KRAKT
Sbjct: 230 KPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 279
>Medtr5g075710.3 | RNA-binding KH domain protein | HC |
chr5:32222391-32219192 | 20130731
Length = 266
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 166/258 (64%), Positives = 191/258 (74%), Gaps = 15/258 (5%)
Query: 33 SQYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSG---MLSNQGFGDFDRLRHRSPSP 89
SQYL+EL+AE QKLGPFMQVLP C RLLNQEILR SG ++ NQGF D+DR++ S P
Sbjct: 17 SQYLTELVAEYQKLGPFMQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKP 76
Query: 90 MAPSNLMSNVPGTG-LGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVD 148
+LM ++ T GWN L E G+ +DWQ APA S+ V+++LRL+IP D
Sbjct: 77 ----SLMPSLDTTSSFTGWNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHD 126
Query: 149 TFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPL 208
P FNFVGRLLGPRGNSLKRVEATTGCRVFIRG GSIKD DKEE LRG+PG+EHL EPL
Sbjct: 127 NHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPL 186
Query: 209 HILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXX 268
HILIEA+LP N+VD+RLRQAQEIIEELLKPVDESQD K+QQLRELA+LNS+ REE
Sbjct: 187 HILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQL 246
Query: 269 XXXXXXXXXXXM-KRAKT 285
M KRAKT
Sbjct: 247 SGSLSPFTSNEMIKRAKT 264
>Medtr5g075710.2 | RNA-binding KH domain protein | HC |
chr5:32222712-32219192 | 20130731
Length = 244
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 184/252 (73%), Gaps = 15/252 (5%)
Query: 39 LLAERQKLGPFMQVLPTCNRLLNQEILRVSG---MLSNQGFGDFDRLRHRSPSPMAPSNL 95
+L E QKLGPFMQVLP C RLLNQEILR SG ++ NQGF D+DR++ S P +L
Sbjct: 1 MLIEYQKLGPFMQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKP----SL 56
Query: 96 MSNVPGTG-LGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFN 154
M ++ T GWN L E G+ +DWQ APA S+ V+++LRL+IP D P FN
Sbjct: 57 MPSLDTTSSFTGWNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFN 110
Query: 155 FVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEA 214
FVGRLLGPRGNSLKRVEATTGCRVFIRG GSIKD DKEE LRG+PG+EHL EPLHILIEA
Sbjct: 111 FVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEA 170
Query: 215 DLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXXXXXXXX 274
+LP N+VD+RLRQAQEIIEELLKPVDESQD K+QQLRELA+LNS+ REE
Sbjct: 171 ELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSP 230
Query: 275 XXXXXM-KRAKT 285
M KRAKT
Sbjct: 231 FTSNEMIKRAKT 242
>Medtr3g062640.1 | RNA-binding KH domain protein | HC |
chr3:28307380-28305002 | 20130731
Length = 237
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/240 (63%), Positives = 177/240 (73%), Gaps = 11/240 (4%)
Query: 4 LYNPNFSPSPVRXXXXXXQIRGTPSSEMDSQYLSELLAERQKLGPFMQVLPTCNRLLNQE 63
+YN SPS R +R +E SQYL ELL+E QKLGPFMQVLP C+RLLNQE
Sbjct: 1 MYNQISSPSSQRTNSPNINMRSNFDAE--SQYLMELLSEHQKLGPFMQVLPLCSRLLNQE 58
Query: 64 ILRVSG----MLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTP 119
ILRVSG + ++QGF DFDR++ + S MA S+L N GWN L + L
Sbjct: 59 ILRVSGKNGLLQNHQGFNDFDRMQFMNQSHMASSDLKPN-----FTGWNSLSHDMLAEVK 113
Query: 120 GMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVF 179
G+ MDWQ AP P S+ V++ILRL+IP D +PNFNFVGRLLGPRGNSLKRVEATTGCRV+
Sbjct: 114 GLNMDWQTAPVVPNSHIVKKILRLDIPKDGYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 173
Query: 180 IRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
IRG GSIKD DKEE LRG+PGYEHL + LHILIEA+LPANIVD+RLR AQEIIEELLKPV
Sbjct: 174 IRGKGSIKDLDKEELLRGRPGYEHLSDELHILIEAELPANIVDVRLRHAQEIIEELLKPV 233
>Medtr3g010220.1 | RNA-binding KH domain protein | HC |
chr3:2351169-2345557 | 20130731
Length = 293
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 180/285 (63%), Gaps = 14/285 (4%)
Query: 9 FSPSPVRXXXXXXQIRGTPSSEMD--SQYLSELLAERQKLGPFMQVLPTCNRLLNQEILR 66
F PSP + +R SS + QYLSELL ERQK+ PFM VLP C RLLNQEILR
Sbjct: 13 FPPSPSQSLPHLSGLRSPASSVISEHDQYLSELLGERQKISPFMAVLPHCYRLLNQEILR 72
Query: 67 VSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGM----- 121
V+ +L N L H SP +A + S G GW Q + P +
Sbjct: 73 VTTILGNASVLGQSGLEHGSP--LAAGGMFSK-GGLDPNGWVSRFQSEM---PSLIQSSP 126
Query: 122 TMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 181
T W S + V++ +R++IPVD+FPNFNFVGRLLGPRGNSLKRVEA T CRV IR
Sbjct: 127 TPSWLSPQGSSSGLLVKKTIRVDIPVDSFPNFNFVGRLLGPRGNSLKRVEANTECRVLIR 186
Query: 182 GTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 241
G GSIKD +EE +RGKPGYEHL EPLHIL+EA+LPA I+D RL QA+EI+E+LL+PV+E
Sbjct: 187 GRGSIKDTAREEMMRGKPGYEHLNEPLHILVEAELPAEIIDARLMQAREILEDLLRPVEE 246
Query: 242 SQDYVKKQQLRELALLNSNLREEXX-XXXXXXXXXXXXXMKRAKT 285
S D+ KKQQLRELA++N LREE MKRAKT
Sbjct: 247 SHDFYKKQQLRELAMINGTLREEGSPMSGSVSPFHNSLGMKRAKT 291
>Medtr2g005590.2 | RNA-binding KH domain protein | HC |
chr2:223815-220572 | 20130731
Length = 311
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/262 (50%), Positives = 163/262 (62%), Gaps = 10/262 (3%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVS----GMLSNQGFGDFDRLRHRSPSP 89
+YL+ELLAERQKLGPF+QVLP RLL QEI R+S G + D R P P
Sbjct: 52 RYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSAGSGFIMEHDHPDSSTTPFRPPLP 111
Query: 90 MAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDT 149
P + +Q R+ + W PT+ V+R++RL++PVD
Sbjct: 112 QHPITRPMDFDWPHREDNGNIQ--RMGSFQASPVGWHGPQGIPTTPIVKRVIRLDVPVDK 169
Query: 150 FPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLH 209
+PN+NFVGR+LGPRGNSLKRVEA T CRV+IRG GS+KD KEEKL+ KPGYEHL EPLH
Sbjct: 170 YPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPLH 229
Query: 210 ILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXXX 269
+L+EA+ P +I++ RL A ++E LLKPVDES D+ KKQQLRELA++N LREE
Sbjct: 230 LLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSMS 289
Query: 270 XXXXXX----XXXXMKRAKTGR 287
MKRAKTGR
Sbjct: 290 PSMSPSMSPFNSNGMKRAKTGR 311
>Medtr2g005590.3 | RNA-binding KH domain protein | HC |
chr2:223787-220586 | 20130731
Length = 312
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 163/263 (61%), Gaps = 11/263 (4%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVS----GMLSNQGFGDFDRLRHRSPSP 89
+YL+ELLAERQKLGPF+QVLP RLL QEI R+S G + D R P P
Sbjct: 52 RYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSAGSGFIMEHDHPDSSTTPFRPPLP 111
Query: 90 MAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDT 149
P + +Q R+ + W PT+ V+R++RL++PVD
Sbjct: 112 QHPITRPMDFDWPHREDNGNIQ--RMGSFQASPVGWHGPQGIPTTPIVKRVIRLDVPVDK 169
Query: 150 FPN-FNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPL 208
+PN +NFVGR+LGPRGNSLKRVEA T CRV+IRG GS+KD KEEKL+ KPGYEHL EPL
Sbjct: 170 YPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPL 229
Query: 209 HILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXX 268
H+L+EA+ P +I++ RL A ++E LLKPVDES D+ KKQQLRELA++N LREE
Sbjct: 230 HLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSM 289
Query: 269 XXXXXXX----XXXXMKRAKTGR 287
MKRAKTGR
Sbjct: 290 SPSMSPSMSPFNSNGMKRAKTGR 312
>Medtr2g005590.1 | RNA-binding KH domain protein | HC |
chr2:223787-220586 | 20130731
Length = 312
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 163/263 (61%), Gaps = 11/263 (4%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVS----GMLSNQGFGDFDRLRHRSPSP 89
+YL+ELLAERQKLGPF+QVLP RLL QEI R+S G + D R P P
Sbjct: 52 RYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSAGSGFIMEHDHPDSSTTPFRPPLP 111
Query: 90 MAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDT 149
P + +Q R+ + W PT+ V+R++RL++PVD
Sbjct: 112 QHPITRPMDFDWPHREDNGNIQ--RMGSFQASPVGWHGPQGIPTTPIVKRVIRLDVPVDK 169
Query: 150 FPN-FNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPL 208
+PN +NFVGR+LGPRGNSLKRVEA T CRV+IRG GS+KD KEEKL+ KPGYEHL EPL
Sbjct: 170 YPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPL 229
Query: 209 HILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXX 268
H+L+EA+ P +I++ RL A ++E LLKPVDES D+ KKQQLRELA++N LREE
Sbjct: 230 HLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSM 289
Query: 269 XXXXXXX----XXXXMKRAKTGR 287
MKRAKTGR
Sbjct: 290 SPSMSPSMSPFNSNGMKRAKTGR 312
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 142 RLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGY 201
+L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRG GS+K+ ++K KP
Sbjct: 217 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 276
Query: 202 EHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNL 261
E LH+L+EAD D L A ++E+LL+PVDE + K+QQLRELA LN +
Sbjct: 277 SE-NEDLHVLVEAD----TADA-LEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 330
Query: 262 REE 264
R+E
Sbjct: 331 RDE 333
>Medtr3g078050.1 | hypothetical protein | LC |
chr3:35166985-35168852 | 20130731
Length = 234
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 23/136 (16%)
Query: 53 LPTCNRLL--NQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTG-LGGWNG 109
+ C+ +L +Q++++ NQGF D+DR++ S P +LM ++ T GWN
Sbjct: 110 ISKCDAMLLYDQQLMKSYEEHRNQGFSDYDRVQFGSVQP----SLMPSLDTTSSFTGWNS 165
Query: 110 LQQERLCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSL-- 167
L E G+ +DWQ AP S+ V+++LRL+IP D P GR L N+L
Sbjct: 166 LSHE------GLNVDWQRAPTVSNSHIVKKMLRLDIPHDNHP----TGRYLKHYINALSI 215
Query: 168 ----KRVEATTGCRVF 179
+R T G +F
Sbjct: 216 IRNHRRATQTCGISIF 231
>Medtr3g083770.1 | RNA-binding KH domain protein | HC |
chr3:37796169-37790828 | 20130731
Length = 804
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 143 LEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYE 202
+ +PV +P + FVG + G G++ KR+E TG ++ I GT + D EK KPG +
Sbjct: 179 VPLPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKA----DTGEKGEIKPGTD 234
Query: 203 HL--YEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
Y+ +H+ I AD D ++ A IIE L+ V
Sbjct: 235 VQCGYQEMHVNISAD----SFD-KVDAAISIIELLISSV 268
>Medtr3g083770.2 | RNA-binding KH domain protein | HC |
chr3:37796223-37790828 | 20130731
Length = 803
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 143 LEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYE 202
+ +PV +P + FVG + G G++ KR+E TG ++ I GT + D EK KPG +
Sbjct: 178 VPLPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKA----DTGEKGEIKPGTD 233
Query: 203 HL--YEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
Y+ +H+ I AD D ++ A IIE L+ V
Sbjct: 234 VQCGYQEMHVNISAD----SFD-KVDAAISIIELLISSV 267