Miyakogusa Predicted Gene

Lj1g3v2534980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2534980.1 tr|B9HFB2|B9HFB2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_820063 PE=4
SV=1,76.19,4e-17,seg,NULL,NODE_62345_length_361_cov_79.789474.path1.1
         (63 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077440.1 | hypothetical protein | HC | chr8:32861270-3285...    58   2e-09

>Medtr8g077440.1 | hypothetical protein | HC |
           chr8:32861270-32857864 | 20130731
          Length = 252

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 33/35 (94%)

Query: 1   MRQHRAFILAERKKRKAQMQEANRKKSIKRVERKM 35
           MRQ RAFILAE+KKRKAQMQEA RKK++K+VERKM
Sbjct: 190 MRQRRAFILAEKKKRKAQMQEAKRKKNVKKVERKM 224