Miyakogusa Predicted Gene

Lj1g3v2443930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2443930.1 tr|G7I4N4|G7I4N4_MEDTR Serine/threonine protein
kinase Nek9 OS=Medicago truncatula GN=MTR_1g042800
P,57.28,6e-18,BRX,Brevis radix-like domain; HYPOTHETICAL PROTEIN,NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; ,CUFF.29019.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g072410.1 | regulator of chromosome condensation (RCC1) fa...    75   1e-14
Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat ...    65   1e-11
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ...    55   1e-08
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ...    54   3e-08
Medtr4g029410.1 | regulator of chromosome condensation (RCC1) fa...    47   6e-06

>Medtr7g072410.1 | regulator of chromosome condensation (RCC1) family
            protein | HC | chr7:26894031-26888474 | 20130731
          Length = 1108

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 40/63 (63%)

Query: 18   VREGETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKY 77
            VREG T+V +QFEPGVYVTL+V+PDG                HQAEEWW  NKD+V  +Y
Sbjct: 990  VREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVKFSKRKFREHQAEEWWTLNKDRVHARY 1049

Query: 78   STQ 80
            S Q
Sbjct: 1050 SPQ 1052


>Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat
            protein | HC | chr1:16011888-16018401 | 20130731
          Length = 1076

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 18   VREGETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKY 77
            VREGET V EQFE GVY+T +V  DG+                QAEEWW+ NKD+V+R+Y
Sbjct: 986  VREGETSVIEQFERGVYITAIVIADGSKIFKRVRFSRRRFSEQQAEEWWSNNKDRVYRRY 1045

Query: 78   S 78
            +
Sbjct: 1046 N 1046


>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
            protein | HC | chr6:12109737-12119303 | 20130731
          Length = 1118

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 22   ETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKYSTQ 80
            + E  EQ+EPGVY+TLV   DG                +QAE WW+ NKD+V+ KY+ +
Sbjct: 1037 DAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNVR 1095


>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
            protein | HC | chr1:44778263-44766991 | 20130731
          Length = 1121

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 22   ETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKYSTQ 80
            E E  EQ+EPGVY+TLV   DG                +QAE WW+ N+D+V+ +Y+ +
Sbjct: 1042 EAEWIEQYEPGVYITLVAMRDGTRDLRRVRFSRRRFGENQAETWWSENRDRVYERYNVR 1100


>Medtr4g029410.1 | regulator of chromosome condensation (RCC1) family
            protein, putative | HC | chr4:10165501-10157053 |
            20130731
          Length = 1045

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 19   REGETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKY 77
            R  ET+  E+F+ GVY  L ++ DG                 QAEEWW +NK +V RKY
Sbjct: 961  RPPETQFFEKFQSGVYALLTLRADGIKIFKRVKFSKRRFTDTQAEEWWRQNKGRVLRKY 1019