Miyakogusa Predicted Gene

Lj1g3v2327880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2327880.1 tr|Q0JAF2|Q0JAF2_ORYSJ Os04g0602300 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os04g06023,42.27,8e-18,seg,NULL; coiled-coil,NULL; TRANSCRIPTION
FACTOR,NULL; ZINC FINGER PROTEIN WITH KRAB AND SCAN
DOMAIN,CUFF.28907.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g068770.1 | trihelix transcription factor GT-3a, putative ...   291   7e-79
Medtr4g015680.1 | trihelix transcription factor GT-3a-like prote...   267   9e-72
Medtr5g026540.1 | trihelix transcription factor GT-3a-like prote...   136   2e-32
Medtr3g085960.1 | trihelix transcription factor | HC | chr3:3888...    62   8e-10
Medtr1g492790.1 | trihelix transcription factor | HC | chr1:4160...    58   9e-09
Medtr1g098870.1 | myb/SANT-like DNA-binding domain protein | HC ...    58   1e-08
Medtr6g035370.1 | myb/SANT-like DNA-binding domain protein | HC ...    56   3e-08
Medtr1g098900.1 | trihelix transcription factor GT-like protein ...    53   4e-07
Medtr1g060990.1 | trihelix transcription factor | HC | chr1:2659...    52   6e-07
Medtr2g026725.1 | Myb/SANT-like DNA-binding domain protein | HC ...    51   2e-06
Medtr3g089020.1 | RNA-metabolising metallo-beta-lactamase | HC |...    49   6e-06

>Medtr7g068770.1 | trihelix transcription factor GT-3a, putative |
           HC | chr7:25258075-25259867 | 20130731
          Length = 293

 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 156/259 (60%), Positives = 169/259 (65%), Gaps = 3/259 (1%)

Query: 37  NIIASASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGY 96
           NII ++SV+ DVTDRFPQWSIQETKEFL+IR+ELDQTFMETKRNKQLWEVISN MKEKGY
Sbjct: 35  NIIGTSSVNVDVTDRFPQWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNTMKEKGY 94

Query: 97  HRSAEQCKCKWKNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLWAEAEGGSK 156
           HRSAEQCKCKWKNLVTRYKGCETME EA RQQFPFYN+LQAIF+ RMQRMLWAEAEGGSK
Sbjct: 95  HRSAEQCKCKWKNLVTRYKGCETMEVEAMRQQFPFYNELQAIFSARMQRMLWAEAEGGSK 154

Query: 157 KKGVHLXXXXXXXXXXXXXX---XHXXXXXXXXXXXXXXXXXXXXXXXXXXXEILEEFMR 213
           KKGVH+                                              EILEEFMR
Sbjct: 155 KKGVHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMIIGGGGNDNNGSNNLKEILEEFMR 214

Query: 214 XXXXXXXXXXXXXXXRESERRLREMEWRQAMEALENERVMMDQXXXXXXXXXXXXXXXXX 273
                          RE+ERRL+EMEWRQ MEALENER+MM+Q                 
Sbjct: 215 QQMQMEAQWMEAFEARENERRLKEMEWRQRMEALENERIMMEQRWREREEQRRIREEARA 274

Query: 274 XXXDALITALLNKLRREDM 292
              D LITALL+KL REDM
Sbjct: 275 EKRDELITALLDKLTREDM 293


>Medtr4g015680.1 | trihelix transcription factor GT-3a-like protein
           | HC | chr4:4726525-4724373 | 20130731
          Length = 279

 Score =  267 bits (682), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 152/247 (61%), Gaps = 2/247 (0%)

Query: 46  ADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKC 105
            DV+DRFPQWSIQET EFL+IRAELDQTFMETKRNKQLWEVISN MKEKGYHRSAEQCKC
Sbjct: 33  VDVSDRFPQWSIQETNEFLLIRAELDQTFMETKRNKQLWEVISNHMKEKGYHRSAEQCKC 92

Query: 106 KWKNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLWAEAEGGSKKKGVHLXX- 164
           KWKNLVTRYKGCETME E  +QQFPFYN+LQ IFT RMQRMLW EAE GSKKK  HL   
Sbjct: 93  KWKNLVTRYKGCETMETEVLKQQFPFYNELQTIFTARMQRMLWTEAEDGSKKKATHLSTD 152

Query: 165 -XXXXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXEILEEFMRXXXXXXXXXX 223
                                                     EIL+EFMR          
Sbjct: 153 DDEDDGNEESEAVSQKGSNRKKKKAKVENESGSSKSFFRNLKEILDEFMRQQLQIEAQWM 212

Query: 224 XXXXXRESERRLREMEWRQAMEALENERVMMDQXXXXXXXXXXXXXXXXXXXXDALITAL 283
                RE+ERRLREMEWRQ ME LENER++M+Q                    DALITAL
Sbjct: 213 EAFEARENERRLREMEWRQQMEMLENERILMEQRWREREEQRRIREEARAEKRDALITAL 272

Query: 284 LNKLRRE 290
           LNKL R+
Sbjct: 273 LNKLERQ 279


>Medtr5g026540.1 | trihelix transcription factor GT-3a-like protein
           | HC | chr5:10916605-10913848 | 20130731
          Length = 302

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 91/128 (71%), Gaps = 5/128 (3%)

Query: 37  NIIASASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGY 96
           ++++ A++  +     PQWS QET+EF+ IRAEL++ F  +KRNK LWEV+S++M+E+GY
Sbjct: 28  SLMSPAAMREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGY 87

Query: 97  HRSAEQCKCKWKNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVR---MQRMLW-AEAE 152
            RS EQCKCKWKNLV RYKG ET +PE  + Q PF+ +L A+FT R   MQR+L  +E  
Sbjct: 88  RRSPEQCKCKWKNLVNRYKGKETSDPEHGK-QCPFFEELHAVFTERAHSMQRLLLESETR 146

Query: 153 GGSKKKGV 160
               KKGV
Sbjct: 147 SAQTKKGV 154


>Medtr3g085960.1 | trihelix transcription factor | HC |
           chr3:38886257-38881057 | 20130731
          Length = 390

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   ET+  + +R E+D  F  +K NK LWE IS +M+EKG+ RS   C  KW+NL+  +
Sbjct: 77  WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 136

Query: 115 K 115
           K
Sbjct: 137 K 137


>Medtr1g492790.1 | trihelix transcription factor | HC |
           chr1:41606848-41604357 | 20130731
          Length = 501

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 54  QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEK-GYHRSAEQCKCKWKNLVT 112
           +W  QET   L IR+ LD  F E  +   LW  IS  M E+ GY RS ++CK K++NL  
Sbjct: 114 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYK 173

Query: 113 RYKGCETMEPEASRQ---QFPFYNDLQAI 138
            YK  +T E +ASRQ    + F+  L+AI
Sbjct: 174 YYK--KTKEGKASRQDGKHYRFFRQLEAI 200


>Medtr1g098870.1 | myb/SANT-like DNA-binding domain protein | HC |
           chr1:44531156-44535019 | 20130731
          Length = 565

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   E    + IR  L+  + E      LWE IS  MK +GY+R+A++CK KW+N+   Y
Sbjct: 373 WPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWENINKYY 432

Query: 115 KGCETMEPEASRQQ------FPFYNDLQAIF 139
           K  +    E+++Q+       P++N+L+AI+
Sbjct: 433 KKMK----ESNKQRRDDSKTCPYFNELEAIY 459



 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W  QET   L IR+++D  F ++     LWE +S ++ + GYHRS+++CK K++N+   +
Sbjct: 56  WPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLADLGYHRSSKKCKEKFENVYKYH 115

Query: 115 KGC-ETMEPEASRQQFPFYNDLQAI 138
           K   E    ++  + + F++ LQA+
Sbjct: 116 KRTKEGRSGKSEGKTYRFFDQLQAL 140


>Medtr6g035370.1 | myb/SANT-like DNA-binding domain protein | HC |
           chr6:12680552-12684213 | 20130731
          Length = 646

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   E +  + +R  LD  + E      LWE IS  MK+ GY+R+A++CK KW+N+   +
Sbjct: 465 WPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISGLMKKMGYNRNAKRCKEKWENINKYF 524

Query: 115 KGCETME---PEASRQQFPFYNDLQAIFTVRMQRMLWAEAEGGSKKKGV 160
           K  +      PE S+   P+++ L A++  R +  +   A   S+ +G 
Sbjct: 525 KKVKESNKKRPEDSK-TCPYFHQLDALY--RQKNKVEGAAAAASRPEGT 570



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W  QET   L IR+++D  F +      LW+ +S +M + GY R++++CK K++N+   +
Sbjct: 56  WPRQETLALLKIRSDMDGAFKDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYH 115

Query: 115 KGC-ETMEPEASRQQFPFYNDLQAI 138
           K   E    ++  + + F++ LQA+
Sbjct: 116 KRTKEGRGGKSDGKTYRFFDQLQAL 140


>Medtr1g098900.1 | trihelix transcription factor GT-like protein |
           HC | chr1:44556038-44552430 | 20130731
          Length = 637

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   E +  + +R  +D  + E      LWE IS  MK  GY+R+A++CK KW+N+   +
Sbjct: 455 WPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYF 514

Query: 115 KGCETME---PEASRQQFPFYNDLQAIF 139
           K  +      PE S+   P+++ L A++
Sbjct: 515 KKVKESNKKRPEDSK-TCPYFHQLDALY 541



 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W  QET   L IR+++D  F +      LW+ +S ++ E GYHRS+++CK K++N+   +
Sbjct: 58  WPRQETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYH 117

Query: 115 K 115
           K
Sbjct: 118 K 118


>Medtr1g060990.1 | trihelix transcription factor | HC |
           chr1:26597350-26600596 | 20130731
          Length = 511

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEK-GYHRSAEQCKCKWKNLVTR 113
           W  QET   L IR+ LD  F E  +   LW+ +S  M E+  Y RS ++C+ K++NL   
Sbjct: 132 WPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHAYQRSGKKCREKFENLYKY 191

Query: 114 YKGCETMEPEASR---QQFPFYNDLQAIF 139
           YK  +T E +A R   + + F+  L+A++
Sbjct: 192 YK--KTKEGKAGRHDGKHYRFFRQLEALY 218


>Medtr2g026725.1 | Myb/SANT-like DNA-binding domain protein | HC |
           chr2:9734426-9736828 | 20130731
          Length = 379

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 45  SADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCK 104
           S+D ++   +W   E +  + +R  L+  F        +WE I+  ++  GY+RSA++CK
Sbjct: 255 SSDPSNN--RWPDVEVQALIAVRTALEHKFGHMGSKGSIWEEIAGALQGMGYNRSAKKCK 312

Query: 105 CKWKNLVTRYK---GCETMEPEASRQQFPFYNDLQAIF 139
            KW+N+   Y+   G     P  S+   P++++L  ++
Sbjct: 313 EKWENINKYYRRTVGSGKKRPVNSK-TCPYFDELDNLY 349


>Medtr3g089020.1 | RNA-metabolising metallo-beta-lactamase | HC |
           chr3:33966677-33957369 | 20130731
          Length = 867

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 54  QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTR 113
           +W  +E K+ + +R++L   F   K    LWE IS  +   G  RS  QCK  W +L  +
Sbjct: 775 KWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLALK 834

Query: 114 YKGCETMEPEASRQQFPFYNDLQAIFT 140
           Y+  E    + SR+ + +  D++ I +
Sbjct: 835 YE--EIKNGKDSRKNWQYLEDMERILS 859