Miyakogusa Predicted Gene
- Lj1g3v2326720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2326720.1 Non Characterized Hit- tr|C6T7X8|C6T7X8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1699
PE=,92.05,0,ZF_PHD_1,Zinc finger, PHD-type, conserved site; SUBFAMILY
NOT NAMED,NULL; CPG BINDING PROTEIN,NULL; ,CUFF.28910.1
(239 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g015830.1 | PHD finger alfin-like protein | HC | chr4:4791... 357 4e-99
Medtr7g068590.1 | PHD finger alfin-like protein | HC | chr7:2513... 355 3e-98
Medtr4g134510.1 | PHD finger alfin-like protein | HC | chr4:5632... 249 2e-66
Medtr1g015185.1 | PHD finger alfin-like protein | HC | chr1:3751... 249 2e-66
Medtr2g040990.1 | PHD finger alfin-like protein | HC | chr2:1796... 243 1e-64
Medtr8g019520.1 | alfin-like transcription factor | HC | chr8:68... 241 5e-64
Medtr8g019520.2 | alfin-like transcription factor | HC | chr8:68... 241 5e-64
Medtr2g099500.1 | PHD finger alfin-like protein | HC | chr2:4265... 233 1e-61
Medtr1g015185.2 | PHD finger alfin-like protein | HC | chr1:3751... 170 1e-42
Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |... 80 3e-15
Medtr3g117280.1 | PHD finger and bromo-adjacent-like domain prot... 49 6e-06
>Medtr4g015830.1 | PHD finger alfin-like protein | HC |
chr4:4791805-4787747 | 20130731
Length = 240
Score = 357 bits (917), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/240 (73%), Positives = 183/240 (76%), Gaps = 1/240 (0%)
Query: 1 MEMASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXX 60
MEMASSPRTVEEIFKDFS+R+ IVRALTQDVD+FY LCDP+KDNLCLYGH NESW
Sbjct: 1 MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120
GINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61 PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120
Query: 121 SLINDFPTVFEVVTDRKPAKDKPAXXXXXXXXXXXXXXXXGQVKSNPKFA-XXXXXXXXX 179
SLIN+ PTVFEVVTDRKP KDKP GQVKSNPK
Sbjct: 121 SLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDDQGYEEEED 180
Query: 180 XXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMRRGRP 239
TLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCS++RGRP
Sbjct: 181 EHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP 240
>Medtr7g068590.1 | PHD finger alfin-like protein | HC |
chr7:25139885-25143273 | 20130731
Length = 242
Score = 355 bits (910), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/242 (73%), Positives = 185/242 (76%), Gaps = 3/242 (1%)
Query: 1 MEMASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXX 60
MEMASSPRTVEEIFKD+SAR+ A+VRALTQDVD+FYGLCDP+KDNLCLYGH NESW
Sbjct: 1 MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120
GINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61 PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120
Query: 121 SLINDFPTVFEVVTDRKPAKD-KPAXXXXXXXXXXXXXXXXGQVKSNPKFAXX--XXXXX 177
SLIN+ PTVFE+VTDRKP KD KPA GQVKSNPKF
Sbjct: 121 SLINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDDGYEEEE 180
Query: 178 XXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMRRG 237
TLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCP CS+RR
Sbjct: 181 EDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRN 240
Query: 238 RP 239
RP
Sbjct: 241 RP 242
>Medtr4g134510.1 | PHD finger alfin-like protein | HC |
chr4:56329915-56334966 | 20130731
Length = 256
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 149/251 (59%), Gaps = 13/251 (5%)
Query: 1 MEMASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXX 60
M PRTVEE+F D+ R+ +++ALT DV+ FY LCDPEK+NLCLYG PNE+W
Sbjct: 4 MAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNL 63
Query: 61 XXXXXXXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKR 118
GINFARDGM +DWLSLVAVHSDSWLL+VAFY GAR +N+RKR
Sbjct: 64 PVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKR 123
Query: 119 LFSLINDFPTVFEVVTDR-KPAKDKPAXXXXXXXXXXXXXXXXGQVKSNPKFAXXXX--- 174
LF +IND PTVFE+ T K +KD+ Q +S K
Sbjct: 124 LFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVK 183
Query: 175 -------XXXXXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQY 227
CG+CG NY DEFWI CD+CE+W+HGKCVKITPAKAE IKQY
Sbjct: 184 EEVDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQY 243
Query: 228 KCPSCSMRRGR 238
KCP CS+++ R
Sbjct: 244 KCPGCSIKKPR 254
>Medtr1g015185.1 | PHD finger alfin-like protein | HC |
chr1:3751255-3746618 | 20130731
Length = 263
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/258 (49%), Positives = 155/258 (60%), Gaps = 27/258 (10%)
Query: 6 SPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXXXXXXX 65
+PRTVEE+F+DF R+ A+++ALT DVD FY CDPEK+NLCLYG P+E W
Sbjct: 9 NPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEEV 68
Query: 66 XXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFSLI 123
GINFARDGM +DWLSLVAVHSD+WLLSVAFY GAR ++ +RKRLF++I
Sbjct: 69 PPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMI 128
Query: 124 NDFPTVFEVVT--DRKPAKDKPAXXXXXXXXXXXXXXXXGQVKSNPKFAXXXXXXXXXXX 181
ND PT+FE VT RK K+K + PKF+
Sbjct: 129 NDLPTIFEAVTGSGRKQGKEKSVSNNSSTKSKSNSKR---SSEPQPKFSKPMAMAMQMQS 185
Query: 182 X--------------------XTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKA 221
TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPA+A
Sbjct: 186 KDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARA 245
Query: 222 ESIKQYKCPSCSMRRGRP 239
E IKQYKCP+CS +R RP
Sbjct: 246 EHIKQYKCPACSNKRARP 263
>Medtr2g040990.1 | PHD finger alfin-like protein | HC |
chr2:17960762-17956593 | 20130731
Length = 253
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/253 (49%), Positives = 154/253 (60%), Gaps = 14/253 (5%)
Query: 1 MEMASS-----PRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNES 55
ME+A PRTVE +F+DF R+ +++ALT DV+DFY CDPEK+NL LYG+P E
Sbjct: 1 MELAGDGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGEL 60
Query: 56 WXXXXXXXXXXXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNR 113
W GINFARDGM +DWLSLVAVHSD+WLLSVAFY GAR ++
Sbjct: 61 WEVTLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDK 120
Query: 114 NERKRLFSLINDFPTVFEVVTD--RKPAKDKPAXXXXXXXXXXXXXXXXGQ---VKSNPK 168
+RKRLF+LIND PT+FEVVT +K K+KP+ G S P
Sbjct: 121 ADRKRLFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSIKSKSGSKARGSELAKYSKPP 180
Query: 169 FAXXXXXXXXXXXXXTLCGSCGGNY--NADEFWIGCDICERWYHGKCVKITPAKAESIKQ 226
C +CG +Y +DEFWI CDICE+WYHGKCVKITPA+AE IKQ
Sbjct: 181 AKEDDEGVDDEEEDQGECAACGESYVSASDEFWICCDICEKWYHGKCVKITPARAEHIKQ 240
Query: 227 YKCPSCSMRRGRP 239
YKCP+C+ +R RP
Sbjct: 241 YKCPACNNKRVRP 253
>Medtr8g019520.1 | alfin-like transcription factor | HC |
chr8:6883372-6878935 | 20130731
Length = 256
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 157/249 (63%), Gaps = 15/249 (6%)
Query: 6 SPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXXXXXXX 65
+PRTVEE+F+DF R+ +++ALT DV++FY CDPEK+NLCLYG P+E W
Sbjct: 8 NPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEEV 67
Query: 66 XXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFSLI 123
GINFARDGM +DWLSLVAVHSDSWL+++A+Y GAR ++++RKRLF++I
Sbjct: 68 PPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMI 127
Query: 124 NDFPTVFEVVTD--RKPAKDKPAXXXXXXXXXXXXXXXXG---QVKSN-----PK--FAX 171
ND P+++EVVT +K K+K + QVK PK
Sbjct: 128 NDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQVKQTKPLELPKDDEVE 187
Query: 172 XXXXXXXXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPS 231
TLCG+CG +Y DEFWI CDICE+W+HGKCVKITPA+AE IKQYKCPS
Sbjct: 188 ELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS 247
Query: 232 CS-MRRGRP 239
CS +R RP
Sbjct: 248 CSNNKRARP 256
>Medtr8g019520.2 | alfin-like transcription factor | HC |
chr8:6883362-6878948 | 20130731
Length = 257
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 151/250 (60%), Gaps = 16/250 (6%)
Query: 6 SPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXXXXXXX 65
+PRTVEE+F+DF R+ +++ALT DV++FY CDPEK+NLCLYG P+E W
Sbjct: 8 NPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEEV 67
Query: 66 XXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFSLI 123
GINFARDGM +DWLSLVAVHSDSWL+++A+Y GAR ++++RKRLF++I
Sbjct: 68 PPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMI 127
Query: 124 NDFPTVFEVVTDRKPAKDKPAXXXXXXXXXXXXXXXXGQVKSNPKFAXXX---------- 173
ND P+++EVVT + K Q P+
Sbjct: 128 NDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQVKQTKPLELPKDDEV 187
Query: 174 ---XXXXXXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCP 230
TLCG+CG +Y DEFWI CDICE+W+HGKCVKITPA+AE IKQYKCP
Sbjct: 188 EELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCP 247
Query: 231 SCS-MRRGRP 239
SCS +R RP
Sbjct: 248 SCSNNKRARP 257
>Medtr2g099500.1 | PHD finger alfin-like protein | HC |
chr2:42658288-42662190 | 20130731
Length = 250
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 151/244 (61%), Gaps = 13/244 (5%)
Query: 3 MASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXXXX 62
M RTVE+IF DF +R+T I++ALT DV+DFY CDPEK+NLCLYG NE+W
Sbjct: 1 MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPV 60
Query: 63 XXXXXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLF 120
GINFARDGM +DWL+LVAVHSD+WLLS+AFY GAR ++ +RKRLF
Sbjct: 61 EEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLF 120
Query: 121 SLINDFPTVFEVVTD--RKPAKDKPAXXXXXXXXXXXXXXXXG-QVKS-NPKFAXX---- 172
+LIN+ PTVFEVVT +K K+K + + +S PK A
Sbjct: 121 NLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALLPKDE 180
Query: 173 ---XXXXXXXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKC 229
CG+CG + ADEFWI CDICE+W+HGKCVKITPA+AE IKQYKC
Sbjct: 181 EEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKC 240
Query: 230 PSCS 233
PSCS
Sbjct: 241 PSCS 244
>Medtr1g015185.2 | PHD finger alfin-like protein | HC |
chr1:3751249-3746646 | 20130731
Length = 206
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 6 SPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWXXXXXXXXX 65
+PRTVEE+F+DF R+ A+++ALT DVD FY CDPEK+NLCLYG P+E W
Sbjct: 9 NPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEEV 68
Query: 66 XXXXXXXXXGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFSLI 123
GINFARDGM +DWLSLVAVHSD+WLLSVAFY GAR ++ +RKRLF++I
Sbjct: 69 PPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMI 128
Query: 124 NDFPTVFEVVT--DRKPAKDKPA 144
ND PT+FE VT RK K+K
Sbjct: 129 NDLPTIFEAVTGSGRKQGKEKSV 151
>Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |
20130731
Length = 152
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 116 RKRLFSLINDFPTVFEVVTD--RKPAKDKPAXXXXXXXXXXXXXXXXGQ---VKSNPKFA 170
RKRLF+ IND PT+FEVVT +K K+KP+ G S P
Sbjct: 29 RKRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 88
Query: 171 XXXXXXXXXXXXXTLCGSCGGNYNADEFWIGCDICERWYHGKCVK-ITPAKAESIKQYKC 229
C +CG NY + WYHGKCVK ITPA+AE IKQY+C
Sbjct: 89 EDDEEVDDEEEYQGECTACGENYVS------------WYHGKCVKKITPAQAEQIKQYRC 136
Query: 230 PSCSMRRGRP 239
P+C+ +R RP
Sbjct: 137 PTCNNKRVRP 146
>Medtr3g117280.1 | PHD finger and bromo-adjacent-like domain protein
| HC | chr3:54859053-54862407 | 20130731
Length = 196
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 189 CGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSM 234
C YN DE + CD C W+H C+ +T +AE I + C SCS+
Sbjct: 124 CEMPYNPDEVMVQCDHCTDWFHPACIDMTVEEAERIDNFSCESCSL 169