Miyakogusa Predicted Gene

Lj1g3v2325590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2325590.1 Non Characterized Hit- tr|A8B830|A8B830_GIAIC
Putative uncharacterized protein OS=Giardia
intestinal,23.78,7e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; LMBR1,LMBR1-like membrane protein; coiled,CUFF.28891.1
         (509 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g068440.1 | LIMR family protein | HC | chr7:25050246-25055...   838   0.0  

>Medtr7g068440.1 | LIMR family protein | HC | chr7:25050246-25055627
           | 20130731
          Length = 509

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/509 (82%), Positives = 444/509 (87%)

Query: 1   MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDVNQAYFPKFVVVLGLSVAAISILML 60
           MGDFN                 NVYLLVNYQHPDDVNQAYFPKFVVVLGLSVAAISILML
Sbjct: 1   MGDFNLALVIVAIVVCVIVFLVNVYLLVNYQHPDDVNQAYFPKFVVVLGLSVAAISILML 60

Query: 61  PADVANRQACRHAIYNGACNLTLPMKDLWLAIYILDAVLVFFVIPFAMFFYEGDQDKSVG 120
           PADVANRQACRHAIYNGACNLTLPMK+LWLA+YI+DA+LVFFVIPFAMF+YEGDQDKS+G
Sbjct: 61  PADVANRQACRHAIYNGACNLTLPMKNLWLAVYIIDAILVFFVIPFAMFYYEGDQDKSIG 120

Query: 121 KRIKSALLWVVTTAIVCALVLGILYGLVGKVDFTVRHLXXXXXXXXXXWNFNNGQPCIGS 180
           KRIKSAL+W+V+TA+VCALVLGILYGLVGKVDFTVRHL          W  N+G PC+G+
Sbjct: 121 KRIKSALMWMVSTAVVCALVLGILYGLVGKVDFTVRHLSSSTEAFPGSWGLNSGNPCVGN 180

Query: 181 GTKQCSAYSASPSSEKTWTMRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFI 240
           G  QCSAYSASPSSEKTWTMR+TFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFI
Sbjct: 181 GVHQCSAYSASPSSEKTWTMRSTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFI 240

Query: 241 RRPKAVITRSQYIKEATELGKKARELKKAAESLHQEERGGAKGRKFRKNVKSVEKELFQL 300
           RRPKAVITRSQYIKEATELGKKA+ELKKAAESLHQEERGGAKGRK RKNVK+VEKEL+QL
Sbjct: 241 RRPKAVITRSQYIKEATELGKKAKELKKAAESLHQEERGGAKGRKHRKNVKAVEKELYQL 300

Query: 301 EEDVKLLEEMYPQGEKAETTWALTVLGYLAKFVLGILGFIVSVAWVAHIIIYLLIDPPLS 360
           EEDVKLLEEMYPQGEKAET+WALTVLGYLAK VLGILG IVSVAW+AHIIIYLLI+PPLS
Sbjct: 301 EEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGLIVSVAWIAHIIIYLLINPPLS 360

Query: 361 PFLNEVFIKLDDIWGLLGTXXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGGTLMN 420
           PFLNEVFIKLDDIWGLLGT             VIAGA MLGLRLVFITIHPMKWG TLMN
Sbjct: 361 PFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGATMLGLRLVFITIHPMKWGATLMN 420

Query: 421 SFLFNVGLILLCSISVIQFCSXXXXXXXXXXXXXEIFGHTLESLRGIKYLYKYNVFQIAF 480
           SFLFNVGLILLCSISVIQFCS             EIFGHTL+SLRGIKYLYKYNVFQ AF
Sbjct: 421 SFLFNVGLILLCSISVIQFCSTSFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYAF 480

Query: 481 VVLAGLTFVYYAAFGWRRKKPSGRFQLST 509
           V+LAGLTFVYYAA GWRRKKPSGRFQLST
Sbjct: 481 VILAGLTFVYYAAVGWRRKKPSGRFQLST 509