Miyakogusa Predicted Gene

Lj1g3v2313120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2313120.1 Non Characterized Hit- tr|I3T9K0|I3T9K0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.32,0,HIGHMOBLTY12,NULL; no description,High mobility group,
superfamily; HMG_box,High mobility group,
sup,NODE_18835_length_687_cov_614.995605.path2.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g068280.1 | high mobility group (HMG)-box protein | HC | c...    94   4e-20
Medtr3g115580.1 | high mobility group (HMG)-box protein | HC | c...    51   4e-07

>Medtr7g068280.1 | high mobility group (HMG)-box protein | HC |
           chr7:24961149-24964926 | 20130731
          Length = 170

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 60/122 (49%), Gaps = 1/122 (0%)

Query: 1   MTKGKKAGKTSKEVLKPVDDRKVGKRKAAVXXXXXXXXXXXXXXXXXX-XXXXXXSAFFV 59
           MTKGK   KTS++ LKPVDDRKVGKRKAA                          SAFFV
Sbjct: 1   MTKGKGTAKTSRDALKPVDDRKVGKRKAAAKPEKVPKTKKEKKAKKDPNKPKRPPSAFFV 60

Query: 60  FLEDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXLINAYN 119
           FLEDFRKTFKAENPN            EKWKSLT                    L+NAYN
Sbjct: 61  FLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYN 120

Query: 120 NK 121
           NK
Sbjct: 121 NK 122


>Medtr3g115580.1 | high mobility group (HMG)-box protein | HC |
           chr3:54096577-54098910 | 20130731
          Length = 155

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 31/69 (44%)

Query: 55  SAFFVFLEDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXL 114
           SAFFVF+EDFRK FK +NP+             KWKSL+                     
Sbjct: 50  SAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKT 109

Query: 115 INAYNNKQA 123
           + AYN KQA
Sbjct: 110 MKAYNKKQA 118