Miyakogusa Predicted Gene

Lj1g3v2300720.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2300720.2 tr|A9RW32|A9RW32_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,50.65,0.00000000000005, ,CUFF.28837.2
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | ...   150   4e-37
Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | ...   127   2e-30
Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | ...   127   2e-30
Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | ...   127   2e-30
Medtr1g037280.2 | sister chromatid cohesion PDS5-like protein | ...    62   2e-10
Medtr1g037280.1 | sister chromatid cohesion PDS5-like protein | ...    62   2e-10
Medtr1g037280.3 | sister chromatid cohesion PDS5-like protein | ...    60   3e-10

>Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr2:9853017-9871224 | 20130731
          Length = 1683

 Score =  150 bits (378), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/79 (91%), Positives = 77/79 (97%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           +VKSYLP+KDALVRPGIDGLLDILRNMLSYGEISKD+KSSSVDKAHLRL SA A+LRL+R
Sbjct: 806 IVKSYLPVKDALVRPGIDGLLDILRNMLSYGEISKDIKSSSVDKAHLRLASAKAVLRLAR 865

Query: 65  LWDHKIPADIFHLTLRTSE 83
           LWDHKIPADIFHLTLRTSE
Sbjct: 866 LWDHKIPADIFHLTLRTSE 884


>Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119254-56132113 | 20130731
          Length = 1667

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA VRP ID LLDILRNMLSYGE+SKDL+SS VDKAHL+L SA A++RLSR
Sbjct: 814 LVKSYLPFKDAHVRPDIDSLLDILRNMLSYGEMSKDLQSSPVDKAHLKLASAKAVIRLSR 873

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFP 90
           LWD  IP D+FHLTLR   V  + FP
Sbjct: 874 LWDQYIPVDLFHLTLR---VTQTSFP 896


>Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119240-56132121 | 20130731
          Length = 1660

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA VRP ID LLDILRNMLSYGE+SKDL+SS VDKAHL+L SA A++RLSR
Sbjct: 814 LVKSYLPFKDAHVRPDIDSLLDILRNMLSYGEMSKDLQSSPVDKAHLKLASAKAVIRLSR 873

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFP 90
           LWD  IP D+FHLTLR   V  + FP
Sbjct: 874 LWDQYIPVDLFHLTLR---VTQTSFP 896


>Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119398-56132067 | 20130731
          Length = 1657

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA VRP ID LLDILRNMLSYGE+SKDL+SS VDKAHL+L SA A++RLSR
Sbjct: 814 LVKSYLPFKDAHVRPDIDSLLDILRNMLSYGEMSKDLQSSPVDKAHLKLASAKAVIRLSR 873

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFP 90
           LWD  IP D+FHLTLR   V  + FP
Sbjct: 874 LWDQYIPVDLFHLTLR---VTQTSFP 896


>Medtr1g037280.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708601-13728159 | 20130731
          Length = 1414

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKS+LP +    +  I+GLLDIL  ML     S D   S  DKAH+RL +A AILRL++
Sbjct: 878 LVKSFLPYQGNHTKQNINGLLDILSRMLRENGGSVD---SENDKAHIRLAAATAILRLAK 934

Query: 65  LWDHKIPADIFHLTL 79
            WD  I  +IF  T+
Sbjct: 935 KWDLYIDPEIFRFTM 949


>Medtr1g037280.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708601-13728159 | 20130731
          Length = 1415

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKS+LP +    +  I+GLLDIL  ML     S D   S  DKAH+RL +A AILRL++
Sbjct: 878 LVKSFLPYQGNHTKQNINGLLDILSRMLRENGGSVD---SENDKAHIRLAAATAILRLAK 934

Query: 65  LWDHKIPADIFHLTL 79
            WD  I  +IF  T+
Sbjct: 935 KWDLYIDPEIFRFTM 949


>Medtr1g037280.3 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708489-13733416 | 20130731
          Length = 1435

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNML--SYGEISKDLKSSSVDKAHLRLTSAMAILRL 62
           LVKS+LP +    +  I+GLLDIL  ML  + G + +       DKAH+RL +A AILRL
Sbjct: 878 LVKSFLPYQGNHTKQNINGLLDILSRMLRENGGSVDRYTGLCENDKAHIRLAAATAILRL 937

Query: 63  SRLWDHKIPADIFHLTL 79
           ++ WD  I  +IF  T+
Sbjct: 938 AKKWDLYIDPEIFRFTM 954