Miyakogusa Predicted Gene

Lj1g3v2297620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2297620.1 Non Characterized Hit- tr|E1ZP61|E1ZP61_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,35.26,4e-17,SUBFAMILY NOT NAMED,NULL; SYNTAXIN-18,NULL;
coiled-coil,NULL; Syntaxin-18_N,SNARE-complex protein Sy,CUFF.28865.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701...   355   1e-98

>Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701424
           | 20130731
          Length = 309

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/183 (92%), Positives = 175/183 (95%)

Query: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60
           MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPF KAA KTLESIGE
Sbjct: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAFKTLESIGE 60

Query: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120
           L+ FLLKHRKDYTDLHRTTE ERDSIEQEVSAFIKTCQEQIDVLKNSINNEEE SKGWLG
Sbjct: 61  LDHFLLKHRKDYTDLHRTTEHERDSIEQEVSAFIKTCQEQIDVLKNSINNEEENSKGWLG 120

Query: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLSRVTRKD 180
           I TAKANADTIAHKHGVVLILSERLH VTAQFDQLRA+RFQDAINRA PRRKL+R+T+KD
Sbjct: 121 ITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRITKKD 180

Query: 181 STE 183
           STE
Sbjct: 181 STE 183