Miyakogusa Predicted Gene

Lj1g3v2280650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2280650.1 Non Characterized Hit- tr|O82329|O82329_ARATH
Putative uncharacterized protein At2g14910
OS=Arabidop,25.7,1e-18,seg,NULL; DUF760,Protein of unknown function
DUF760; coiled-coil,NULL,CUFF.28791.1
         (341 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115240.1 | DUF760 family protein | HC | chr3:53877908-538...   500   e-141
Medtr6g008890.1 | Hop-interacting protein THI043 | HC | chr6:249...    55   7e-08
Medtr4g071610.1 | Hop-interacting protein THI043 | HC | chr4:270...    55   7e-08

>Medtr3g115240.1 | DUF760 family protein | HC |
           chr3:53877908-53882290 | 20130731
          Length = 333

 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/340 (75%), Positives = 273/340 (80%), Gaps = 7/340 (2%)

Query: 2   IMYLLTGKPSFTPKLVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRNSNRKGRFPLRV 61
           +MYLLT KPS  P+ +L                              RNSN KG    R+
Sbjct: 1   MMYLLTAKPSLRPQFILSSSLSSSSSTSTSRFSFRTRSPSSIAFS--RNSNHKGALSFRI 58

Query: 62  EAYDSSTNPAGDSNSKPPNGTLSKSRREILLEYVKNVQPEFMEMFVKRAPQQVVDAMRQT 121
           +A   S N AG+S S  PNGTLSKSRREILLEYVK VQPEFME+FVKRAP  VVDAMRQT
Sbjct: 59  QA---SKNDAGESKS--PNGTLSKSRREILLEYVKTVQPEFMELFVKRAPPPVVDAMRQT 113

Query: 122 VTNMIGTLPPQFFAVTITTVAENLAQLMYSVMMTGYMFKNAQYRLELQEGLEQVALPDVQ 181
           VTNMIGTLPPQFF++TI TVAENLAQLMYSVMMTGYMF+NAQYRLELQE LEQVALPDVQ
Sbjct: 114 VTNMIGTLPPQFFSITIATVAENLAQLMYSVMMTGYMFRNAQYRLELQESLEQVALPDVQ 173

Query: 182 DKKDKPDYAPGTQKNVSGEVLRWNHVSGPERIDAKKYXXXXXXXXXXXNRQVGRQSSNAQ 241
           DKKD PDYAPGTQKNVSGEV+RWN++SGPER+DAKKY           NRQVGRQSSNAQ
Sbjct: 174 DKKDIPDYAPGTQKNVSGEVIRWNNISGPERMDAKKYIEILEAEIEELNRQVGRQSSNAQ 233

Query: 242 NELLEYLKSLEPRNLKDLTSSAGEDVVLAMNTFIKRLLAVADPSQMKTSVTETSATELSK 301
           NELLEYLKSLEPRNLKDLTSSAGEDVVLAMNTFIKRLLAVADP+QMKTSVTETSA+EL K
Sbjct: 234 NELLEYLKSLEPRNLKDLTSSAGEDVVLAMNTFIKRLLAVADPTQMKTSVTETSASELGK 293

Query: 302 LLYWLMVVGYSIRNIEVRYDMERVLGTPPKLAELPPGENV 341
           LLYWLMVVGYSIRNIEVRYDMERVLGT  KLAELPPGENV
Sbjct: 294 LLYWLMVVGYSIRNIEVRYDMERVLGTTAKLAELPPGENV 333


>Medtr6g008890.1 | Hop-interacting protein THI043 | HC |
           chr6:2492614-2497579 | 20130731
          Length = 356

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%)

Query: 90  ILLEYVKNVQPEFMEMFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLM 149
           ++ + ++ ++P    +  K   +   D+M+QT++ M+G LP   F VT++   + L +L+
Sbjct: 72  VISKMLRRIKPLDNSVISKGVSEASKDSMKQTISTMLGLLPSDHFDVTVSFEIQPLHRLL 131

Query: 150 YSVMMTGYMFKNAQYRLELQEGLE 173
            S ++TGY   NA+YR+ L   LE
Sbjct: 132 VSSIITGYTLWNAEYRMSLTRNLE 155


>Medtr4g071610.1 | Hop-interacting protein THI043 | HC |
           chr4:27095155-27100168 | 20130731
          Length = 356

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%)

Query: 90  ILLEYVKNVQPEFMEMFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLM 149
           ++ + ++ ++P    +  K   +   D+M+QT++ M+G LP   F VT++   + L +L+
Sbjct: 72  VISKMLRRIKPLDNSVISKGVSEASKDSMKQTISTMLGLLPSDHFDVTVSFEIQPLHRLL 131

Query: 150 YSVMMTGYMFKNAQYRLELQEGLE 173
            S ++TGY   NA+YR+ L   LE
Sbjct: 132 VSSIITGYTLWNAEYRMSLTRNLE 155