Miyakogusa Predicted Gene
- Lj1g3v2280620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2280620.1 Non Characterized Hit- tr|I1JSW6|I1JSW6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19428 PE,93.43,0,WD40
repeats,WD40 repeat; WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; ,CUFF.28788.1
(350 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g115200.1 | transducin/WD-like repeat-protein | HC | chr3:... 633 0.0
Medtr3g115200.2 | transducin/WD-like repeat-protein | HC | chr3:... 530 e-150
Medtr4g073080.1 | nucleosome/chromatin assembly factor group pro... 68 2e-11
Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor |... 53 6e-07
Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor |... 53 6e-07
Medtr4g096880.1 | nucleosome/chromatin assembly factor group pro... 51 2e-06
Medtr3g045130.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 50 3e-06
Medtr3g045130.2 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 50 3e-06
>Medtr3g115200.1 | transducin/WD-like repeat-protein | HC |
chr3:53847316-53851987 | 20130731
Length = 350
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/350 (87%), Positives = 325/350 (92%)
Query: 1 MQAASSGIGYGPKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60
MQA SSGIGYG KYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLS++GTELFCEG
Sbjct: 1 MQAVSSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSANGTELFCEG 60
Query: 61 LFSHPNEIWDLVSCPFDQRIFSTVYSNGEAYGAAIWQIPELYGELNSPQLERITSLDTDA 120
LFSHPNEIWDLVSCPFDQRIFSTVYSNGE YGAAIWQIPELYGELNSPQLE+ITSL+T +
Sbjct: 61 LFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLEKITSLETQS 120
Query: 121 SKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQVQSKDSAGVLHKLSGGAWDPHD 180
KIKCILWWP+GRHDKLISI++ENLCLW+LDVSKKTAQVQS+DSAG++HKLSGGAWDPHD
Sbjct: 121 GKIKCILWWPTGRHDKLISIDDENLCLWSLDVSKKTAQVQSQDSAGMMHKLSGGAWDPHD 180
Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN 240
+NSVAAT ES LQFWDVRTMKKT SIECSHV VDY P K +ILVTAEHESGI +WD R
Sbjct: 181 MNSVAATSESSLQFWDVRTMKKTLSIECSHVRSVDYHPRKNNILVTAEHESGIRIWDQRK 240
Query: 241 PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQADSSSR 300
PKVP+QELPGHTHWTW VKCNPEYDGMILSAGTDS VNLW AS N DEL TESQA+SS
Sbjct: 241 PKVPIQELPGHTHWTWIVKCNPEYDGMILSAGTDSTVNLWSASINHDELPTESQAESSVS 300
Query: 301 WVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK 350
VDPLLNTYSDYEDSIYGLTWSSR+PWIFASLSYDGRVV+ES+KPFISKK
Sbjct: 301 LVDPLLNTYSDYEDSIYGLTWSSRQPWIFASLSYDGRVVLESMKPFISKK 350
>Medtr3g115200.2 | transducin/WD-like repeat-protein | HC |
chr3:53847316-53851987 | 20130731
Length = 299
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/292 (86%), Positives = 270/292 (92%)
Query: 1 MQAASSGIGYGPKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60
MQA SSGIGYG KYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLS++GTELFCEG
Sbjct: 1 MQAVSSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSANGTELFCEG 60
Query: 61 LFSHPNEIWDLVSCPFDQRIFSTVYSNGEAYGAAIWQIPELYGELNSPQLERITSLDTDA 120
LFSHPNEIWDLVSCPFDQRIFSTVYSNGE YGAAIWQIPELYGELNSPQLE+ITSL+T +
Sbjct: 61 LFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLEKITSLETQS 120
Query: 121 SKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQVQSKDSAGVLHKLSGGAWDPHD 180
KIKCILWWP+GRHDKLISI++ENLCLW+LDVSKKTAQVQS+DSAG++HKLSGGAWDPHD
Sbjct: 121 GKIKCILWWPTGRHDKLISIDDENLCLWSLDVSKKTAQVQSQDSAGMMHKLSGGAWDPHD 180
Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN 240
+NSVAAT ES LQFWDVRTMKKT SIECSHV VDY P K +ILVTAEHESGI +WD R
Sbjct: 181 MNSVAATSESSLQFWDVRTMKKTLSIECSHVRSVDYHPRKNNILVTAEHESGIRIWDQRK 240
Query: 241 PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTE 292
PKVP+QELPGHTHWTW VKCNPEYDGMILSAGTDS VNLW AS N DEL TE
Sbjct: 241 PKVPIQELPGHTHWTWIVKCNPEYDGMILSAGTDSTVNLWSASINHDELPTE 292
>Medtr4g073080.1 | nucleosome/chromatin assembly factor group
protein | HC | chr4:27640107-27642823 | 20130731
Length = 405
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 15/217 (6%)
Query: 127 LWWPSGRHDKLIS-INEENLCLWNLDVSKKTAQVQS----KDSAGVLHKLSGGAWDPHDV 181
L W ++ L+S N+ +CLW++ + ++ + + + V+ +S W H+
Sbjct: 168 LSWSGFKNGYLLSGSNDHKICLWDVFGASESNVLDAVHVYEGHESVVEDVS---WHFHNE 224
Query: 182 NSVAATCES-YLQFWDVRTMKKTNSIEC--SHVCGVDYDPCKKHILVTAEHESGIHVWDL 238
N + + L WD+RT K +S++ V V + P + IL TA ++ I ++DL
Sbjct: 225 NLFGSGGDDCKLIIWDLRTNKAQHSLKPHEREVNFVSFSPYSEWILATASSDTDIGLFDL 284
Query: 239 RNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQADSS 298
R +VPL L HT + V+ +P ++G++ S+ D + +W + DEL +
Sbjct: 285 RKLEVPLHFLSSHTDEVFQVEWDPNHEGVLASSSADRRLMVWDLNRIGDELIEGDEEGGP 344
Query: 299 SRWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYD 335
LL ++ ++ I +W+ +PW+ +S++ D
Sbjct: 345 PE----LLFSHGGHKGKISDFSWNQNQPWVISSVAED 377
>Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 100 ELYGELNSPQLERITSLDTDASKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQV 159
+LY P I S ++ + + P R L + ++ + LW +D + T+
Sbjct: 87 KLYDLALPPTSNPIRSFHEHTREVHSVDYNPVRRDSFLSAAWDDTVKLWTVD--RPTSVR 144
Query: 160 QSKDSAGVLHKLSGGAWDPHDVNSVA-ATCESYLQFWDVRTMKKTNSIECSH--VCGVDY 216
K+ A ++ W+P + A A+ + ++ WDVR T + + D+
Sbjct: 145 TFKEHAYCVY---SSVWNPRHADVFASASGDCTVRIWDVREPGSTMILPAHEHEILSCDW 201
Query: 217 DPCKKHILVTAEHESGIHVWDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSA 276
+ + I+ T + + VWD+R+ +VP+ L GH + VK +P +++S D
Sbjct: 202 NKYDECIIATGSVDKSVKVWDVRSYRVPVAVLNGHGYAVRKVKFSPHVRNLLVSCSYDMT 261
Query: 277 VNLW 280
V +W
Sbjct: 262 VCVW 265
>Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 100 ELYGELNSPQLERITSLDTDASKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQV 159
+LY P I S ++ + + P R L + ++ + LW +D + T+
Sbjct: 87 KLYDLALPPTSNPIRSFHEHTREVHSVDYNPVRRDSFLSAAWDDTVKLWTVD--RPTSVR 144
Query: 160 QSKDSAGVLHKLSGGAWDPHDVNSVA-ATCESYLQFWDVRTMKKTNSIECSH--VCGVDY 216
K+ A ++ W+P + A A+ + ++ WDVR T + + D+
Sbjct: 145 TFKEHAYCVY---SSVWNPRHADVFASASGDCTVRIWDVREPGSTMILPAHEHEILSCDW 201
Query: 217 DPCKKHILVTAEHESGIHVWDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSA 276
+ + I+ T + + VWD+R+ +VP+ L GH + VK +P +++S D
Sbjct: 202 NKYDECIIATGSVDKSVKVWDVRSYRVPVAVLNGHGYAVRKVKFSPHVRNLLVSCSYDMT 261
Query: 277 VNLW 280
V +W
Sbjct: 262 VCVW 265
>Medtr4g096880.1 | nucleosome/chromatin assembly factor group
protein | HC | chr4:38572918-38568681 | 20130731
Length = 423
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 18/220 (8%)
Query: 127 LWWPSGRHDKLISINEE-NLCLWNLDVSKKTAQVQS----KDSAGVLHKLSGGAWD-PHD 180
L W + L+S +++ +CLW+++ + K + + K GV+ + AW H+
Sbjct: 184 LSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDV---AWHLRHE 240
Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIEC-----SHVCGVDYDPCKKHILVTAEHESGIHV 235
+ + YL WD+RT T ++ S V + ++P + I+ T + + +
Sbjct: 241 YLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKL 300
Query: 236 WDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQA 295
WDLR L H + V NP+ + ++ S + +W S +E + E
Sbjct: 301 WDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAE 360
Query: 296 DSSSRWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYD 335
D LL + + I +W+ E W+ AS++ D
Sbjct: 361 DGPPE----LLFIHGGHTSKISDFSWNPCEDWVVASVAED 396
>Medtr3g045130.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr3:14589773-14591633 | 20130731
Length = 521
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 169 HKLSGGAWDPHDVNSVAATC--ESYLQFWDVRTMKKTNSIE--CSHVCGVDYDPCKKHIL 224
H S D H S+AA+C ++ + WD+RT + ++E + G+ + P H L
Sbjct: 397 HSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYH-L 455
Query: 225 VTAEHESGIHVWDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLW 280
T ++ +WDLR K L +P H++ VK P+ +++A D +W
Sbjct: 456 ATGGEDNTCRIWDLRKKKS-LYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVW 510
>Medtr3g045130.2 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr3:14589773-14591633 | 20130731
Length = 521
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 169 HKLSGGAWDPHDVNSVAATC--ESYLQFWDVRTMKKTNSIE--CSHVCGVDYDPCKKHIL 224
H S D H S+AA+C ++ + WD+RT + ++E + G+ + P H L
Sbjct: 397 HSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYH-L 455
Query: 225 VTAEHESGIHVWDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLW 280
T ++ +WDLR K L +P H++ VK P+ +++A D +W
Sbjct: 456 ATGGEDNTCRIWDLRKKKS-LYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVW 510