Miyakogusa Predicted Gene

Lj1g3v2279610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2279610.1 Non Characterized Hit- tr|Q6YY99|Q6YY99_ORYSJ
Putative uncharacterized protein OJ1014_E02.22
OS=Oryz,63.79,0.0000000000008,seg,NULL,CUFF.28779.1
         (215 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115180.1 | transmembrane protein, putative | HC | chr3:53...   290   6e-79

>Medtr3g115180.1 | transmembrane protein, putative | HC |
           chr3:53843231-53838823 | 20130731
          Length = 421

 Score =  290 bits (742), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 165/219 (75%), Gaps = 5/219 (2%)

Query: 2   PFTKRVSDFDWRFVVLIIFPVSLVIXXXXXX---XXXXXXYPVQNFLFNLPFXXXXXVR- 57
           PFTKR SD +WR +VLII   S +I                 VQN L NLPF        
Sbjct: 11  PFTKRFSDINWRILVLIIPLFSFIIFFFFHAPTLNALSSFSSVQNLLSNLPFINTANSSP 70

Query: 58  -KDELLRSRMAVCLVGGARRFELTGPSIIQNILKVYPISDLFLHSPLDNDAFKFSLLKSA 116
            KDELLRS++AVCLVGGARRFELTGPSI++ ILK YP SDLFLHSPLD+DAFKFSLLK A
Sbjct: 71  SKDELLRSKIAVCLVGGARRFELTGPSILEMILKEYPNSDLFLHSPLDSDAFKFSLLKLA 130

Query: 117 PNVAAVRIFHPQPLPENESYARVLTAHNSPNGIQGLIQYFNLVEGCLTMIKSHQERNNFT 176
           P VAAV IFHPQPL ENES  RVLTA NSPNGIQGLIQYF+LVEGCLTMI SHQE+N   
Sbjct: 131 PKVAAVNIFHPQPLQENESSVRVLTAQNSPNGIQGLIQYFDLVEGCLTMINSHQEKNKIK 190

Query: 177 YDWIIRTRVDGYWNAPLRPENFVPSQYLVPSGSSYGGLN 215
           YDWIIRTRVDGYWN PL P  FVP QYLVP+GSSYGGLN
Sbjct: 191 YDWIIRTRVDGYWNGPLGPNFFVPGQYLVPAGSSYGGLN 229