Miyakogusa Predicted Gene

Lj1g3v2268400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2268400.1 Non Characterized Hit- tr|I1H8K9|I1H8K9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50,3e-17,seg,NULL,CUFF.28768.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115080.1 | transmembrane protein, putative | HC | chr3:53...   112   9e-26

>Medtr3g115080.1 | transmembrane protein, putative | HC |
          chr3:53772463-53774358 | 20130731
          Length = 108

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 1  MITRSNLAEQLREYQIRSKHDWXXXXXXXXXXXXXX-XXKVDVVVFVIWELVILAFLVFS 59
          MITRSNLAEQLR+YQIRSKHDW                 KVDVVVFVIWELVILAFLVFS
Sbjct: 1  MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFS 60

Query: 60 VVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 91
          VVSLYFKHIQLAF            MKITKQV
Sbjct: 61 VVSLYFKHIQLAFILVCITVLLLLCMKITKQV 92