Miyakogusa Predicted Gene

Lj1g3v2264820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2264820.1 Non Characterized Hit- tr|D8TJU3|D8TJU3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,44.96,5e-19,seg,NULL; cyanin_plasto: plastocyanin,Plastocyanin;
COPPER_BLUE,Blue (type 1) copper domain; Copper-,CUFF.28771.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114850.1 | plastocyanin | HC | chr3:53626831-53626328 | 2...   221   2e-58

>Medtr3g114850.1 | plastocyanin | HC | chr3:53626831-53626328 |
           20130731
          Length = 167

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 121/167 (72%)

Query: 1   MATVTSTAVAIPSFTGLXXXXXXXXXXXXXXXXXXQMPRLSVKASLKDFGXXXXXXXXXX 60
           MATVTST VAIPSFTGL                  Q+PRL V+ASLKDFG          
Sbjct: 1   MATVTSTTVAIPSFTGLKANASKVSAIAKVPTSNSQLPRLCVRASLKDFGVAVVATAASA 60

Query: 61  XXXXXXXXIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGGVDA 120
                   +E+LLG+ DGGLAFVPN+F+V  G+ ITFKNNAGFPHNV+FDEDE+P GVDA
Sbjct: 61  LLASNALAVEVLLGASDGGLAFVPNNFTVNAGDTITFKNNAGFPHNVIFDEDEIPSGVDA 120

Query: 121 SKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 167
           +KISM +EDLLNAPGETYSVTLDAKGTYKFYCSPH GAGMVG VTVN
Sbjct: 121 AKISMPEEDLLNAPGETYSVTLDAKGTYKFYCSPHAGAGMVGQVTVN 167