Miyakogusa Predicted Gene

Lj1g3v2251580.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2251580.1 Non Characterized Hit- tr|I1JSZ4|I1JSZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1351 PE=,76.24,0,S4
RNA-binding domain,RNA-binding S4 domain; no description,RNA-binding
S4 domain; S4,RNA-binding S4,CUFF.28745.1
         (294 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114540.2 | RNA pseudouridine synthase, putative | HC | ch...   409   e-114
Medtr3g114540.1 | RNA pseudouridine synthase, putative | HC | ch...   408   e-114

>Medtr3g114540.2 | RNA pseudouridine synthase, putative | HC |
           chr3:53482122-53487173 | 20130731
          Length = 325

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/298 (72%), Positives = 236/298 (79%), Gaps = 11/298 (3%)

Query: 6   SSGYCRVSTPRA---FKFQTPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGGEPRA 62
           S G+C VST      F F+T  SP       N             F+++S+S    EP++
Sbjct: 7   SCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTE-EPKS 65

Query: 63  NYAGVQLEEIV-DNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSF 121
           NYAGV LEEIV D  I SGK RLDSWIS+RINGISRARVQSSIK+GLVHVNGRVV+KVSF
Sbjct: 66  NYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSF 125

Query: 122 NVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVN 181
           NV++GDEIKCTIAELQ LRAVPE+IPLDIVYED+HLLVINKPAHMVVHPAPGNTSGTLVN
Sbjct: 126 NVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVN 185

Query: 182 GILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASS------CEGSAASIRPGIVHRLD 235
           GILHHCNLPN EFS E+AL+ TEDSDDELN F   SS         S ASIRPGIVHRLD
Sbjct: 186 GILHHCNLPNVEFSKEEALSDTEDSDDELNGFSSQSSSSVGLDSRLSMASIRPGIVHRLD 245

Query: 236 KGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
           KGTSGLLVVAK+EHSH KLSEQFKLRTIKRVYVSLT GVPTPV+GR+EV VGRDPNNR
Sbjct: 246 KGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNR 303


>Medtr3g114540.1 | RNA pseudouridine synthase, putative | HC |
           chr3:53482122-53487173 | 20130731
          Length = 456

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/298 (72%), Positives = 236/298 (79%), Gaps = 11/298 (3%)

Query: 6   SSGYCRVSTPRA---FKFQTPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGGEPRA 62
           S G+C VST      F F+T  SP       N             F+++S+S    EP++
Sbjct: 7   SCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTE-EPKS 65

Query: 63  NYAGVQLEEIV-DNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSF 121
           NYAGV LEEIV D  I SGK RLDSWIS+RINGISRARVQSSIK+GLVHVNGRVV+KVSF
Sbjct: 66  NYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSF 125

Query: 122 NVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVN 181
           NV++GDEIKCTIAELQ LRAVPE+IPLDIVYED+HLLVINKPAHMVVHPAPGNTSGTLVN
Sbjct: 126 NVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVN 185

Query: 182 GILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASS------CEGSAASIRPGIVHRLD 235
           GILHHCNLPN EFS E+AL+ TEDSDDELN F   SS         S ASIRPGIVHRLD
Sbjct: 186 GILHHCNLPNVEFSKEEALSDTEDSDDELNGFSSQSSSSVGLDSRLSMASIRPGIVHRLD 245

Query: 236 KGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
           KGTSGLLVVAK+EHSH KLSEQFKLRTIKRVYVSLT GVPTPV+GR+EV VGRDPNNR
Sbjct: 246 KGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNR 303