Miyakogusa Predicted Gene

Lj1g3v2249530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2249530.1 Non Characterized Hit- tr|B8B9E1|B8B9E1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,52.87,0.00000000000002,"Winged helix" DNA-binding domain,NULL;
no description,Winged helix-turn-helix transcription
repress,CUFF.28757.1
         (439 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114480.1 | 26S proteasome non-ATPase regulatory subunit 3...   755   0.0  
Medtr1g026030.1 | 26S proteasome non-ATPase regulatory subunit 3...   677   0.0  
Medtr3g114480.2 | 26S proteasome non-ATPase regulatory subunit 3...   618   e-177
Medtr3g114480.3 | 26S proteasome non-ATPase regulatory subunit 3...   608   e-174
Medtr1g107545.1 | 26S proteasome non-ATPase regulatory subunit 3...   165   7e-41

>Medtr3g114480.1 | 26S proteasome non-ATPase regulatory subunit 3 |
           HC | chr3:53458493-53453460 | 20130731
          Length = 490

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/438 (85%), Positives = 386/438 (88%), Gaps = 3/438 (0%)

Query: 1   MTQDLEMKDRXXXXXXXXXXXXXXLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRK 60
           MTQDLEMKDR              L HLKEIAS+IETGSYSKEVRRIARAVRLTI LR+K
Sbjct: 1   MTQDLEMKDRSTPSNSVSPPVPSTLQHLKEIASVIETGSYSKEVRRIARAVRLTIALRKK 60

Query: 61  LTASIISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDXXXXXXXXXXXXXXPAKHLLP 120
           LTAS+ISSFLDHVLTPGSE HAKLSAYLPKEDDHEMEVD               AKHLLP
Sbjct: 61  LTASVISSFLDHVLTPGSEPHAKLSAYLPKEDDHEMEVDAATSAIQTPIPT---AKHLLP 117

Query: 121 ELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELT 180
           ELEIY YLLVLLFLIDQK+YNEAKACSSASVAWLKNVNRRTVDVIASRL+FYYSYS+ELT
Sbjct: 118 ELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELT 177

Query: 181 GDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHS 240
           GDLAEIRGNLLALHRIATLRHDELGQET               DQAEKLRSKAPRFEAHS
Sbjct: 178 GDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS 237

Query: 241 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEI 300
           NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWA+IVRLLLGEI
Sbjct: 238 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEI 297

Query: 301 PERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHIV 360
           PERTVFMQKGME ALRPYFELTNAVRIGDLELFRNIADKFATTF+ADGTHNLIVRLRH V
Sbjct: 298 PERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNV 357

Query: 361 IRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMV 420
           IRTGLRNISISYSRISLADVA+KLRL+S +PVADAESIVSKAIRDGAIDATLDHANGWMV
Sbjct: 358 IRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMV 417

Query: 421 SKETGDIYSTNEPQLAFQ 438
           SKETGDIYSTNEPQLAF 
Sbjct: 418 SKETGDIYSTNEPQLAFN 435


>Medtr1g026030.1 | 26S proteasome non-ATPase regulatory subunit 3 |
           HC | chr1:8383258-8377821 | 20130731
          Length = 483

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/439 (77%), Positives = 365/439 (83%), Gaps = 15/439 (3%)

Query: 1   MTQDLEMKDRXXXXXXXXXXXXXXLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRK 60
           MTQD EMKD               L HLKEIAS+IETGS  KEVR+I+RAVRLT+ LR K
Sbjct: 1   MTQDEEMKD----LPTPSQSIPSTLQHLKEIASIIETGSNLKEVRKISRAVRLTLALRSK 56

Query: 61  LTASIISSFLDHVLTPGSEAHAKLSAYLP--KEDDHEMEVDXXXXXXXXXXXXXXPAKHL 118
           LTA ++SSFL +VL P    H+ LS+YLP  K  DHEMEVD              PAKHL
Sbjct: 57  LTAPVLSSFLHYVLPP----HSTLSSYLPNSKGGDHEMEVDTATSAAIQT-----PAKHL 107

Query: 119 LPELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYE 178
           LPELEIY Y LVLLFLIDQKRYNEAKACSSAS+  LKN+NRRTVDVIASRLYFYYSYSYE
Sbjct: 108 LPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYE 167

Query: 179 LTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEA 238
           LTGDLAEIRG L  LHRIATLRHDELGQET               DQAEKLRSKAPRFEA
Sbjct: 168 LTGDLAEIRGTLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEA 227

Query: 239 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLG 298
           HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA+GFRIQCNKWA+IVRLLLG
Sbjct: 228 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLG 287

Query: 299 EIPERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRH 358
           EIPERT+F+QKGME ALRPYFELTNAVRIGDLELFRN+A+K+ATTFN DGT+NLIVRLRH
Sbjct: 288 EIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFNTDGTNNLIVRLRH 347

Query: 359 IVIRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGW 418
            VIRTGLRNISISYSRISLADVA+KLRL+SA P+ADAESI+SKAIRDGAIDATLDHANGW
Sbjct: 348 NVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANGW 407

Query: 419 MVSKETGDIYSTNEPQLAF 437
           MVSKE GDIYSTNEPQLAF
Sbjct: 408 MVSKEIGDIYSTNEPQLAF 426


>Medtr3g114480.2 | 26S proteasome non-ATPase regulatory subunit 3 |
           HC | chr3:53457822-53453460 | 20130731
          Length = 423

 Score =  618 bits (1594), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/356 (86%), Positives = 316/356 (88%), Gaps = 3/356 (0%)

Query: 83  KLSAYLPKEDDHEMEVDXXXXXXXXXXXXXXPAKHLLPELEIYSYLLVLLFLIDQKRYNE 142
           +L A    EDDHEMEVD               AKHLLPELEIY YLLVLLFLIDQK+YNE
Sbjct: 16  QLKACPQTEDDHEMEVDAATSAIQTPIPT---AKHLLPELEIYCYLLVLLFLIDQKKYNE 72

Query: 143 AKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHD 202
           AKACSSASVAWLKNVNRRTVDVIASRL+FYYSYS+ELTGDLAEIRGNLLALHRIATLRHD
Sbjct: 73  AKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHD 132

Query: 203 ELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYT 262
           ELGQET               DQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYT
Sbjct: 133 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYT 192

Query: 263 DAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMENALRPYFELT 322
           DAKESLLQAARKAPVAARGFRIQCNKWA+IVRLLLGEIPERTVFMQKGME ALRPYFELT
Sbjct: 193 DAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELT 252

Query: 323 NAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHIVIRTGLRNISISYSRISLADVAR 382
           NAVRIGDLELFRNIADKFATTF+ADGTHNLIVRLRH VIRTGLRNISISYSRISLADVA+
Sbjct: 253 NAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAK 312

Query: 383 KLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFQ 438
           KLRL+S +PVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAF 
Sbjct: 313 KLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFN 368


>Medtr3g114480.3 | 26S proteasome non-ATPase regulatory subunit 3 |
           HC | chr3:53458493-53453460 | 20130731
          Length = 453

 Score =  608 bits (1567), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/324 (91%), Positives = 304/324 (93%)

Query: 115 AKHLLPELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYS 174
           AKHLLPELEIY YLLVLLFLIDQK+YNEAKACSSASVAWLKNVNRRTVDVIASRL+FYYS
Sbjct: 75  AKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYS 134

Query: 175 YSYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAP 234
           YS+ELTGDLAEIRGNLLALHRIATLRHDELGQET               DQAEKLRSKAP
Sbjct: 135 YSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP 194

Query: 235 RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVR 294
           RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWA+IVR
Sbjct: 195 RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVR 254

Query: 295 LLLGEIPERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIV 354
           LLLGEIPERTVFMQKGME ALRPYFELTNAVRIGDLELFRNIADKFATTF+ADGTHNLIV
Sbjct: 255 LLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIV 314

Query: 355 RLRHIVIRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDH 414
           RLRH VIRTGLRNISISYSRISLADVA+KLRL+S +PVADAESIVSKAIRDGAIDATLDH
Sbjct: 315 RLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDH 374

Query: 415 ANGWMVSKETGDIYSTNEPQLAFQ 438
           ANGWMVSKETGDIYSTNEPQLAF 
Sbjct: 375 ANGWMVSKETGDIYSTNEPQLAFN 398


>Medtr1g107545.1 | 26S proteasome non-ATPase regulatory subunit 3,
           putative | HC | chr1:48876789-48878515 | 20130731
          Length = 188

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 115/216 (53%), Gaps = 67/216 (31%)

Query: 128 LLVLLFLIDQKRY---NEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELTGDLA 184
            L+   L +  RY   N AKAC SAS AWLKNVNRRTVDV AS     YSYS+ELTGDLA
Sbjct: 9   FLIAKLLRNASRYDLPNGAKACPSASFAWLKNVNRRTVDVTASGQKKIYSYSHELTGDLA 68

Query: 185 EIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQF 244
           E++ NL A+HRIAT                               RS AP FEA+SN QF
Sbjct: 69  EVQSNLFAMHRIAT-------------------------------RSLAPLFEAYSN-QF 96

Query: 245 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERT 304
             Y FYL KIRTIQ+EYTDA E+             G                       
Sbjct: 97  SPYFFYLRKIRTIQVEYTDALEN----------TGTGI---------------------- 124

Query: 305 VFMQKGMENALRPYFELTNAVRIGDLELFRNIADKF 340
           VFMQ  ME  LRPYFELTNAVRI DLELFRNIADKF
Sbjct: 125 VFMQYEMETVLRPYFELTNAVRIRDLELFRNIADKF 160