Miyakogusa Predicted Gene

Lj1g3v2239520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2239520.1 Non Characterized Hit- tr|B0X169|B0X169_CULQU
Putative uncharacterized protein OS=Culex
quinquefasci,35.5,4e-19,GCV_H,Glycine cleavage H-protein; SUBFAMILY
NOT NAMED,NULL; UNCHARACTERIZED,NULL; Single hybrid moti,CUFF.28727.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114470.1 | single hybrid motif protein | HC | chr3:534526...   320   7e-88
Medtr6g083100.1 | hypothetical protein | HC | chr6:31051257-3105...   123   1e-28

>Medtr3g114470.1 | single hybrid motif protein | HC |
           chr3:53452644-53448378 | 20130731
          Length = 211

 Score =  320 bits (819), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 171/203 (84%), Gaps = 13/203 (6%)

Query: 3   STINTDQIIVDESKCSEIERPQQRNEEDEEAELQKLLLPNVDELPLTPPSAVETNFVSYF 62
           ST+  DQII DES  SE            E +L+KLLLP+V+  PL PPSA+ETNFV+YF
Sbjct: 2   STVENDQII-DESNSSE------------EDDLEKLLLPDVENFPLIPPSAIETNFVTYF 48

Query: 63  ALDFTKPGHDHYIYRHANGLCVIGLAPSHIAFKDEGGITAVDFNVGKSDRSGMKVTGKRK 122
           ALDFTKP HD YIYRHANGLCVIGLAPSHIAFKDEGGIT+VDFNVGKSDR+ +KV+GKRK
Sbjct: 49  ALDFTKPAHDQYIYRHANGLCVIGLAPSHIAFKDEGGITSVDFNVGKSDRTAVKVSGKRK 108

Query: 123 KNAQHLESNSALCKISTKNYSYIVRCCVKGSLLEVNQQLIKQPELLNVLADREGYIAIVM 182
           KNAQH ESN+ALCK+STKN SYIVRCCVKGSLLEVNQQLIK PELLN  ADREGYIAI+M
Sbjct: 109 KNAQHFESNTALCKVSTKNDSYIVRCCVKGSLLEVNQQLIKHPELLNGSADREGYIAIMM 168

Query: 183 PKPADWLKVKDSLVSIQEYKKAR 205
           PKPADWLKVK S VS+QEYKK R
Sbjct: 169 PKPADWLKVKASFVSLQEYKKVR 191


>Medtr6g083100.1 | hypothetical protein | HC |
           chr6:31051257-31054310 | 20130731
          Length = 111

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 84/131 (64%), Gaps = 33/131 (25%)

Query: 20  IERPQQRNEEDEEAELQKLLLPNVDELPLTPPSAVETNFVSYFALDFTKPGHDHYIYRHA 79
           + R  +++ ++EE +L+KLLLP+V  LPL PPSAVETNFV+YFAL               
Sbjct: 11  VVRGVEKSGDEEEDDLEKLLLPDVQNLPLIPPSAVETNFVTYFAL--------------- 55

Query: 80  NGLCVIGLAPSHIAFKDEGGITAVDFNVGKSDRSGMKVTGKRKKNAQHLESNSALCKIST 139
                             GGIT+VDFNVGKSD++ +KV+ KRKKNAQH ESN++LCK+ST
Sbjct: 56  ------------------GGITSVDFNVGKSDQTAVKVSEKRKKNAQHYESNTSLCKVST 97

Query: 140 KNYSYIVRCCV 150
           KN SYIVR  V
Sbjct: 98  KNDSYIVRYVV 108