Miyakogusa Predicted Gene

Lj1g3v2172910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2172910.1 Non Characterized Hit- tr|D8T0B3|D8T0B3_SELML
Putative uncharacterized protein E2F1-2
OS=Selaginella,42.28,2e-19,seg,NULL; TRANSCRIPTION FACTOR E2F,NULL;
TRANSCRIPTION FACTOR E2F,E2F Family; coiled-coil,NULL;
E2F-,CUFF.28683.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g113800.1 | E2F transcription factor | HC | chr3:53087588-...   190   4e-49
Medtr3g113800.2 | E2F transcription factor | HC | chr3:53087590-...   160   3e-40
Medtr4g052000.1 | E2F transcription factor | HC | chr4:18814210-...   114   4e-26
Medtr1g105110.1 | E2F transcription factor | HC | chr1:25000070-...   106   9e-24

>Medtr3g113800.1 | E2F transcription factor | HC |
           chr3:53087588-53083226 | 20130731
          Length = 363

 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 109/150 (72%)

Query: 3   LKNRGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLF 62
           ++ +GCDGL PREL+ QVN LK E++SLYAEE +L+ CI               + KYLF
Sbjct: 163 IRWKGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRNLEEGENTGKYLF 222

Query: 63  VNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHL 122
             KEDILTLPCFQN++LI IKAPKAS IEVPDPDEELGF QRQY+M VRSATGPI+LY L
Sbjct: 223 FTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLL 282

Query: 123 RKQERKFEDCGAKQMKSIDPSLNNDHCRMD 152
            K + KFE   AKQ K  DPS N++ CRMD
Sbjct: 283 NKHDHKFEGVSAKQAKLEDPSRNSNGCRMD 312


>Medtr3g113800.2 | E2F transcription factor | HC |
           chr3:53087590-53083246 | 20130731
          Length = 309

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 91/121 (75%)

Query: 3   LKNRGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLF 62
           ++ +GCDGL PREL+ QVN LK E++SLYAEE +L+ CI               + KYLF
Sbjct: 163 IRWKGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRNLEEGENTGKYLF 222

Query: 63  VNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHL 122
             KEDILTLPCFQN++LI IKAPKAS IEVPDPDEELGF QRQY+M VRSATGPI+LY L
Sbjct: 223 FTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLL 282

Query: 123 R 123
           +
Sbjct: 283 K 283


>Medtr4g052000.1 | E2F transcription factor | HC |
           chr4:18814210-18820291 | 20130731
          Length = 460

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 4/144 (2%)

Query: 3   LKNR----GCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQ 58
           LKNR    G D   P E DD    L+AEIE+L  EE  L++ I               ++
Sbjct: 195 LKNRIQWKGLDVSKPGEADDSFASLQAEIENLTIEERRLDEQIREMQERLRNLSEDENNE 254

Query: 59  KYLFVNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIH 118
           K+LFV +EDI  LPCFQN+ LIAIKAP  + +EVPDPDE + + QR+Y++ +RS  GPI 
Sbjct: 255 KFLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPID 314

Query: 119 LYHLRKQERKFEDCGAKQMKSIDP 142
           +Y + + E KFE+     + S  P
Sbjct: 315 VYLVSQFEEKFEEINGVDVASKFP 338


>Medtr1g105110.1 | E2F transcription factor | HC |
           chr1:25000070-24993884 | 20130731
          Length = 463

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 3   LKNR----GCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQ 58
           +KNR    G +   P  +D  ++ LK+E+++L  EE  L+D I               +Q
Sbjct: 199 IKNRIYWKGIESSTPGNVDGDISLLKSEVDNLSLEEQRLDDQIREMQERLRGLSEDENNQ 258

Query: 59  KYLFVNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIH 118
           K+LFV +EDI  LPCFQN+ LIAIKAP  + +EVPDP+E +   QR+Y++ +RS  GPI 
Sbjct: 259 KFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDELQRRYRIILRSTMGPID 318

Query: 119 LYHLRKQERKFEDCGAKQ 136
           +Y + + E KFE+    +
Sbjct: 319 VYLISQFEEKFEEINGAE 336