Miyakogusa Predicted Gene

Lj1g3v2157680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2157680.2 Non Characterized Hit- tr|B9RRN6|B9RRN6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.05,2e-19,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology domain;
TLC,TRAM/LAG1/CLN8 homology domain; SUBFAMILY NOT NAM,CUFF.28673.2
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g063070.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   182   1e-46
Medtr3g063070.2 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   182   1e-46
Medtr5g090550.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   117   5e-27
Medtr3g450410.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   110   5e-25

>Medtr3g063070.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:28547655-28542831 | 20130731
          Length = 264

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 108/143 (75%), Gaps = 9/143 (6%)

Query: 1   MGITLPFGVLAGLLSSDGFVSPSKEIQWLVSVFTGIVFCVIAYRLTAIFSSLLFTGYSKL 60
           M I+  FG LA         + SKE QWL+SVF+GI+F +I Y+LTA FSS LF GY KL
Sbjct: 1   MEISFSFGFLA---------TQSKEAQWLLSVFSGIIFSLIVYQLTAAFSSRLFIGYRKL 51

Query: 61  NSAQKIEWNNRGISTFHALFGAFMSFYLLMLSDFFNDDSQETLVVSRSSTFSNAVLGISI 120
           +SA K+EWNNRG STFHA F +F S YLL+LSD F DDSQE LVV+R+STFSN+VL  S 
Sbjct: 52  SSAGKVEWNNRGFSTFHAFFASFTSLYLLILSDLFKDDSQEKLVVNRTSTFSNSVLSFST 111

Query: 121 GYFITDLAMILWRFPALGGLEYV 143
           GYF+TDLA I+W FPALGGLEYV
Sbjct: 112 GYFLTDLAFIIWNFPALGGLEYV 134


>Medtr3g063070.2 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:28547875-28542849 | 20130731
          Length = 264

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 108/143 (75%), Gaps = 9/143 (6%)

Query: 1   MGITLPFGVLAGLLSSDGFVSPSKEIQWLVSVFTGIVFCVIAYRLTAIFSSLLFTGYSKL 60
           M I+  FG LA         + SKE QWL+SVF+GI+F +I Y+LTA FSS LF GY KL
Sbjct: 1   MEISFSFGFLA---------TQSKEAQWLLSVFSGIIFSLIVYQLTAAFSSRLFIGYRKL 51

Query: 61  NSAQKIEWNNRGISTFHALFGAFMSFYLLMLSDFFNDDSQETLVVSRSSTFSNAVLGISI 120
           +SA K+EWNNRG STFHA F +F S YLL+LSD F DDSQE LVV+R+STFSN+VL  S 
Sbjct: 52  SSAGKVEWNNRGFSTFHAFFASFTSLYLLILSDLFKDDSQEKLVVNRTSTFSNSVLSFST 111

Query: 121 GYFITDLAMILWRFPALGGLEYV 143
           GYF+TDLA I+W FPALGGLEYV
Sbjct: 112 GYFLTDLAFIIWNFPALGGLEYV 134


>Medtr5g090550.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr5:39442711-39437877 | 20130731
          Length = 274

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 72/113 (63%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           S+  GI  C + Y LT +FS++ F  YS L   Q+IEWNNR +ST H++F   MS YL+ 
Sbjct: 35  SIIGGIFACKMVYDLTQLFSTIHFKSYSSLTRIQRIEWNNRAMSTIHSIFITTMSLYLVF 94

Query: 91  LSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            S+ ++D     L+  RSS  S   LG+S+GYF+ DL MI W FPALGG EYV
Sbjct: 95  CSNLYSDSESAELLTERSSALSTFALGVSVGYFMADLGMIFWFFPALGGYEYV 147


>Medtr3g450410.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:17356926-17350940 | 20130731
          Length = 274

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           SVF GI  C + Y LT +  +  F  YS L+  Q+IEWNNR +ST H++F   MS Y++ 
Sbjct: 35  SVFGGIFACKLVYDLTQLIGTNSFKTYSSLSKIQRIEWNNRAMSTIHSIFITTMSLYMVF 94

Query: 91  LSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            S+ F+D+     +  RSS+ S   LG+S+GYF+ D  MI W FP+LGG EYV
Sbjct: 95  CSNLFSDNQSTDPITVRSSSLSTFALGVSVGYFLADFVMIFWYFPSLGGYEYV 147