Miyakogusa Predicted Gene
- Lj1g3v2142290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2142290.1 tr|G7J4N6|G7J4N6_MEDTR Transmembrane and
coiled-coil domain-containing protein OS=Medicago
truncatul,70.51,0,DUF726,Protein of unknown function DUF726;
UNCHARACTERIZED,Protein of unknown function DUF726;
seg,N,gene.g32736.t1.1
(611 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g113090.1 | transmembrane and coiled-coil protein | HC | c... 775 0.0
Medtr3g113090.2 | transmembrane and coiled-coil protein | HC | c... 725 0.0
Medtr5g021430.1 | transmembrane and coiled-coil protein | HC | c... 500 e-141
Medtr8g076250.1 | transmembrane and coiled-coil protein | HC | c... 311 1e-84
Medtr8g076250.2 | transmembrane and coiled-coil protein | HC | c... 290 4e-78
Medtr8g076240.1 | transmembrane protein, putative | HC | chr8:32... 213 7e-55
>Medtr3g113090.1 | transmembrane and coiled-coil protein | HC |
chr3:52836529-52828749 | 20130731
Length = 663
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/668 (62%), Positives = 462/668 (69%), Gaps = 69/668 (10%)
Query: 2 LLPPTHRYXXXXXXXXXXHHSQIHQSPT------------TAQNAASVSDDPELWIHDNF 49
+L P RY H SQ H+ PT T +++S SD+PELWIHDN
Sbjct: 7 ILSPAQRYAAAALFSLALHQSQFHERPTPSSPRTADADAPTTADSSSTSDNPELWIHDNS 66
Query: 50 GLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDKEAALT 109
GLL PV RFL VD+Q+ +GLKETAGSSSQFRHHLG F K+L+EE DA+S +RLDKEAALT
Sbjct: 67 GLLLPVFRFLEVDEQAWHGLKETAGSSSQFRHHLGDFFKVLSEEGDASSKDRLDKEAALT 126
Query: 110 KAVDAMXXXXXXXXXXXXXXXXXXXHEQK--SQDYLCNTTAP-PVVEPHSDSKTKDSESS 166
AVDA HEQK S+D LC+T V D +TK ESS
Sbjct: 127 NAVDA-----TEASMKSIADSSCRGHEQKTRSEDNLCDTELKLYAVGAEPDGETK--ESS 179
Query: 167 ALLPQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKCCRSRQ 226
ALLP + Q+ST LEN EKPLEEAS+ISYQRKVTVLY L+SACVADTAEVD K +SRQ
Sbjct: 180 ALLPLETQSSTALEN---EKPLEEASIISYQRKVTVLYTLLSACVADTAEVDKKFSKSRQ 236
Query: 227 GYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENNWDKWK 286
GYDARHRVSLRL+A WLGV+WNEMEAMESMVA+S+M SLS+AG KE ESI SE +WDKWK
Sbjct: 237 GYDARHRVSLRLLAVWLGVEWNEMEAMESMVAYSIMESLSKAGEKE-ESIVSETSWDKWK 295
Query: 287 RXXXXXXXXXXXXXLMAITGGLAAPAIAHGLGALAPTFGSIVPFIXXXXXXXXXXXXXXX 346
R +MAITGGLAAPAIA GLGALAPT GSI+P I
Sbjct: 296 RGGIVGAAAVTGGTVMAITGGLAAPAIAQGLGALAPTLGSIIPVIGAGGFAAAATATGSV 355
Query: 347 XXXXXXXXXXXXXXXXLTGSKMATRIGSLEEFELKEIGGVHQGHLAVSISISGLAFEEKD 406
LTGSKMATRIGSLEEFEL E+GG H+GHLAV ISISGLAFEE+D
Sbjct: 356 AGSVAVAASFGAAGAGLTGSKMATRIGSLEEFELIEVGGTHRGHLAVRISISGLAFEEED 415
Query: 407 FVKPWEGHYDNSERYVLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTLVAGL 466
F+KPWEGH DN ERYVL+YESK LIALSTAIQDWLTSKI ELMKGGAMMTVLSTLVA L
Sbjct: 416 FIKPWEGHNDNMERYVLKYESKILIALSTAIQDWLTSKIMSELMKGGAMMTVLSTLVAAL 475
Query: 467 AWAATLVTTFDLIDSKWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKC 526
AW ATLVT FDLIDSKWAVA+DRS+KAGKVLAEVLLKGLQGNRP TLVGFSLGARVIFKC
Sbjct: 476 AWPATLVTAFDLIDSKWAVAVDRSEKAGKVLAEVLLKGLQGNRPATLVGFSLGARVIFKC 535
Query: 527 LQFLADSDGDNAGLVEKVVFLGAPISINDENWKAARK----------------------- 563
LQ LADS GDNAGLVE+VV LGAPISI DENW+ ARK
Sbjct: 536 LQCLADSKGDNAGLVERVVLLGAPISIKDENWEVARKMVAGRFVNAYSTNDWTLGITFRA 595
Query: 564 --------------------VDVTQLIEGHSSYLWKTQKILEQLELDNYFAVFRSEQERP 603
VDVT++IEGHSSYLW T KILEQLELDNYFAV++ E E+P
Sbjct: 596 SLLSQGLAGIQPVDIPGIENVDVTRVIEGHSSYLWMTPKILEQLELDNYFAVYKGEHEKP 655
Query: 604 HEEKSIVN 611
EEKS ++
Sbjct: 656 QEEKSTMD 663
>Medtr3g113090.2 | transmembrane and coiled-coil protein | HC |
chr3:52836529-52830694 | 20130731
Length = 598
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/592 (64%), Positives = 427/592 (72%), Gaps = 26/592 (4%)
Query: 2 LLPPTHRYXXXXXXXXXXHHSQIHQSPT------------TAQNAASVSDDPELWIHDNF 49
+L P RY H SQ H+ PT T +++S SD+PELWIHDN
Sbjct: 7 ILSPAQRYAAAALFSLALHQSQFHERPTPSSPRTADADAPTTADSSSTSDNPELWIHDNS 66
Query: 50 GLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDKEAALT 109
GLL PV RFL VD+Q+ +GLKETAGSSSQFRHHLG F K+L+EE DA+S +RLDKEAALT
Sbjct: 67 GLLLPVFRFLEVDEQAWHGLKETAGSSSQFRHHLGDFFKVLSEEGDASSKDRLDKEAALT 126
Query: 110 KAVDAMXXXXXXXXXXXXXXXXXXXHEQK--SQDYLCNTTAP-PVVEPHSDSKTKDSESS 166
AVDA HEQK S+D LC+T V D +TK ESS
Sbjct: 127 NAVDA-----TEASMKSIADSSCRGHEQKTRSEDNLCDTELKLYAVGAEPDGETK--ESS 179
Query: 167 ALLPQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKCCRSRQ 226
ALLP + Q+ST LEN EKPLEEAS+ISYQRKVTVLY L+SACVADTAEVD K +SRQ
Sbjct: 180 ALLPLETQSSTALEN---EKPLEEASIISYQRKVTVLYTLLSACVADTAEVDKKFSKSRQ 236
Query: 227 GYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENNWDKWK 286
GYDARHRVSLRL+A WLGV+WNEMEAMESMVA+S+M SLS+AG KE ESI SE +WDKWK
Sbjct: 237 GYDARHRVSLRLLAVWLGVEWNEMEAMESMVAYSIMESLSKAGEKE-ESIVSETSWDKWK 295
Query: 287 RXXXXXXXXXXXXXLMAITGGLAAPAIAHGLGALAPTFGSIVPFIXXXXXXXXXXXXXXX 346
R +MAITGGLAAPAIA GLGALAPT GSI+P I
Sbjct: 296 RGGIVGAAAVTGGTVMAITGGLAAPAIAQGLGALAPTLGSIIPVIGAGGFAAAATATGSV 355
Query: 347 XXXXXXXXXXXXXXXXLTGSKMATRIGSLEEFELKEIGGVHQGHLAVSISISGLAFEEKD 406
LTGSKMATRIGSLEEFEL E+GG H+GHLAV ISISGLAFEE+D
Sbjct: 356 AGSVAVAASFGAAGAGLTGSKMATRIGSLEEFELIEVGGTHRGHLAVRISISGLAFEEED 415
Query: 407 FVKPWEGHYDNSERYVLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTLVAGL 466
F+KPWEGH DN ERYVL+YESK LIALSTAIQDWLTSKI ELMKGGAMMTVLSTLVA L
Sbjct: 416 FIKPWEGHNDNMERYVLKYESKILIALSTAIQDWLTSKIMSELMKGGAMMTVLSTLVAAL 475
Query: 467 AWAATLVTTFDLIDSKWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKC 526
AW ATLVT FDLIDSKWAVA+DRS+KAGKVLAEVLLKGLQGNRP TLVGFSLGARVIFKC
Sbjct: 476 AWPATLVTAFDLIDSKWAVAVDRSEKAGKVLAEVLLKGLQGNRPATLVGFSLGARVIFKC 535
Query: 527 LQFLADSDGDNAGLVEKVVFLGAPISINDENWKAARKVDVTQLIEGHSSYLW 578
LQ LADS GDNAGLVE+VV LGAPISI DENW+ ARK+ + + +S+ W
Sbjct: 536 LQCLADSKGDNAGLVERVVLLGAPISIKDENWEVARKMVAGRFVNAYSTNDW 587
>Medtr5g021430.1 | transmembrane and coiled-coil protein | HC |
chr5:8282675-8274807 | 20130731
Length = 672
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/659 (45%), Positives = 399/659 (60%), Gaps = 70/659 (10%)
Query: 3 LPPTHRYXXXXXXXXXXHHSQIHQS------------PTTAQNAASVSDDPELWIHDNFG 50
L PT RY H +Q+HQ+ P+++ + +V +DP+LW+H G
Sbjct: 16 LTPTQRYAAGALFGLALHQAQLHQTHPLGLSTDDFPSPSSSTSTGAVFEDPDLWVHHTSG 75
Query: 51 LLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDKEAALTK 110
LL PV FL +D + +GL+ET+GSS RH +G FL+LL+EE D ++++RLD+E AL++
Sbjct: 76 LLRPVFIFLDIDSAAWSGLEETSGSSVATRH-VGPFLRLLSEEYDDDNAKRLDQELALSE 134
Query: 111 AVDAMXXXXXXXXXXXXXXXXX-XXHEQKSQDYLCNTTAPPVVEPHSDS-----KTKDSE 164
AVDA+ +E + ++ V+P+S+ +T+ E
Sbjct: 135 AVDALVLSLEKNSESSRSKRKKLREYEHECREKFSTAD----VQPNSEKVDMHLETQQEE 190
Query: 165 SSALLPQQKQASTELENV-TLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKCCR 223
+ ++ N T E P+EE ++SYQRKVTVLY L++AC++D E + K R
Sbjct: 191 DTLFFECEEDPHEGSSNSKTDEGPVEELMMLSYQRKVTVLYQLLAACLSDIGEKNTKYTR 250
Query: 224 SRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENNWD 283
R+GYDARHRV+LRL+ATWL +KW +MEA+E +V+ S M + E + + E+ +E+ W
Sbjct: 251 RRKGYDARHRVALRLLATWLDIKWTKMEAVEMIVSSSAMAIVKEQESNK-EAQSNESGWA 309
Query: 284 KWKRXXXXXXXXXXXXXLMAITGGLAAPAIAHGLGALAPTFGSIVPFIXXXXXXXXXXXX 343
KWKR LMAITGGLAAPAIA GLGALAPT G+++P I
Sbjct: 310 KWKRGGIIGAAALTGGALMAITGGLAAPAIAAGLGALAPTLGTLIPVIGAGGFAAAASAA 369
Query: 344 XXXXXXXXXXXXXXXXXXXLTGSKMATRIGSLEEFELKEIGGVH-QGHLAVSISISGLAF 402
LTG+KMA R+GS++EFE + IG H QG LAV I +SG F
Sbjct: 370 GTVAGSVAVAASFGAAGAGLTGTKMARRVGSVDEFEFRAIGDNHNQGRLAVEILVSGFVF 429
Query: 403 EEKDFVKPWEGHYDNSERYVLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTL 462
EE DFV+PWEG DN ERY LQ+ESKNLIA+STAIQDWLTS+IA+ELMK GAMMTVLS L
Sbjct: 430 EEDDFVRPWEGQNDNLERYALQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLSAL 489
Query: 463 VAGLAWAATLVTTFDLIDSKWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARV 522
+ LAW A L+ D IDS W++AIDRSDKAGK+LAEVLL GLQGNRPVTL+G+SLGARV
Sbjct: 490 LTALAWPAALLAATDFIDSTWSIAIDRSDKAGKLLAEVLLGGLQGNRPVTLIGYSLGARV 549
Query: 523 IFKCLQFLADSDGDNAGLVEKVVFLGAPISINDENWKAARK------------------- 563
IFKCL+ LA+++ ++A LVE+VV LGAPI+I D NW+AARK
Sbjct: 550 IFKCLECLAETE-NHAELVERVVLLGAPIAIKDVNWEAARKMVAGRFINAYSRTDWMLGV 608
Query: 564 ------------------------VDVTQLIEGHSSYLWKTQKILEQLELDNYFAVFRS 598
VDVT IEGHSSYLW TQ+IL++LEL+ Y+ V+ S
Sbjct: 609 AFRASLLSQGLAGIQPIDIPGIQNVDVTDRIEGHSSYLWATQQILDELELETYYPVYNS 667
>Medtr8g076250.1 | transmembrane and coiled-coil protein | HC |
chr8:32291086-32296204 | 20130731
Length = 316
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/278 (59%), Positives = 193/278 (69%), Gaps = 45/278 (16%)
Query: 363 LTGSKMATRIGSLEEFELKEIGGVH-QGHLAVSISISGLAFEEKDFVKPWEGHYDNSERY 421
LTGSKMA R+G ++EF+ K IG H QG L V I ISG FE++DF++PWEG DN ERY
Sbjct: 15 LTGSKMARRVGGVDEFDFKPIGENHNQGRLGVEILISGFVFEKEDFIRPWEGLNDNLERY 74
Query: 422 VLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTLVAGLAWAATLVTTFDLIDS 481
LQ+ESKNLIA+STAIQDWLTS++A++LMK GAMMTVLSTLV LAW A L+ D IDS
Sbjct: 75 SLQWESKNLIAVSTAIQDWLTSRLAMQLMKQGAMMTVLSTLVTALAWPAVLLAATDFIDS 134
Query: 482 KWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKCLQFLADSDGDNAGLV 541
KW +AI+RS+KAGK+LAEVLLKGLQGNRPVTLVG+SLGARVIF CLQ LA ++ + A LV
Sbjct: 135 KWTIAINRSNKAGKLLAEVLLKGLQGNRPVTLVGYSLGARVIFSCLQCLAKTE-NGAELV 193
Query: 542 EKVVFLGAPISINDENWKAARK-------------------------------------- 563
E+VV LGAPISI DENW+AARK
Sbjct: 194 ERVVLLGAPISIRDENWEAARKMVAGRFVNAYSRNDWILGVAFRASLLTKGLAGIEPVDI 253
Query: 564 -----VDVTQLIEGHSSYLWKTQKILEQLELDNYFAVF 596
VDVT IEGHSSYLW TQ IL+QL+LD F V+
Sbjct: 254 PGIQNVDVTDHIEGHSSYLWATQHILDQLQLDTCFPVY 291
>Medtr8g076250.2 | transmembrane and coiled-coil protein | HC |
chr8:32291086-32295315 | 20130731
Length = 262
Score = 290 bits (741), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 173/217 (79%), Gaps = 2/217 (0%)
Query: 363 LTGSKMATRIGSLEEFELKEIGGVH-QGHLAVSISISGLAFEEKDFVKPWEGHYDNSERY 421
LTGSKMA R+G ++EF+ K IG H QG L V I ISG FE++DF++PWEG DN ERY
Sbjct: 15 LTGSKMARRVGGVDEFDFKPIGENHNQGRLGVEILISGFVFEKEDFIRPWEGLNDNLERY 74
Query: 422 VLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTLVAGLAWAATLVTTFDLIDS 481
LQ+ESKNLIA+STAIQDWLTS++A++LMK GAMMTVLSTLV LAW A L+ D IDS
Sbjct: 75 SLQWESKNLIAVSTAIQDWLTSRLAMQLMKQGAMMTVLSTLVTALAWPAVLLAATDFIDS 134
Query: 482 KWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKCLQFLADSDGDNAGLV 541
KW +AI+RS+KAGK+LAEVLLKGLQGNRPVTLVG+SLGARVIF CLQ LA ++ + A LV
Sbjct: 135 KWTIAINRSNKAGKLLAEVLLKGLQGNRPVTLVGYSLGARVIFSCLQCLAKTE-NGAELV 193
Query: 542 EKVVFLGAPISINDENWKAARKVDVTQLIEGHSSYLW 578
E+VV LGAPISI DENW+AARK+ + + +S W
Sbjct: 194 ERVVLLGAPISIRDENWEAARKMVAGRFVNAYSRNDW 230
>Medtr8g076240.1 | transmembrane protein, putative | HC |
chr8:32287921-32290517 | 20130731
Length = 409
Score = 213 bits (541), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 214/366 (58%), Gaps = 45/366 (12%)
Query: 2 LLPPTHRYXXXXXXXXXXHHSQIHQS---PTTAQN----------------AASVSDDPE 42
L T RY H SQI+Q+ P A + + SVSDDP
Sbjct: 12 FLSSTQRYAAAALFGLSLHDSQINQTRILPLPASDDSISNINRISSSSSSSSDSVSDDPH 71
Query: 43 LWIHDNFGLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSE-- 100
LW+H + GLL PV +FL +D + GL+ETAGS S HH+G F++LL++ESD NS+E
Sbjct: 72 LWVHHHSGLLRPVFKFLDIDSSAWYGLEETAGSPSAT-HHVGPFMRLLSQESDDNSAESA 130
Query: 101 -RLDKEAALTKAVDAMXXXXXXX-XXXXXXXXXXXXHEQKSQDYLCNTTAPPV------- 151
RL++E AL+KAVDA+ +E + ++ +AP V
Sbjct: 131 QRLEQELALSKAVDAIVLEMEKNLQPSNSKRERINEYEHQCRE---KYSAPDVQSNPEKA 187
Query: 152 -VEPHSDSKTKDSESSALL-----PQQKQASTELENVTLEKPLEEASLISYQRKVTVLYA 205
V+ + D++ K+++++ L+ PQQ+ +++++ EKP+EE ++S QRKVTVLY
Sbjct: 188 DVDVNLDNQ-KETDAAPLINLEDPPQQRSDNSKID----EKPIEEVLMLSDQRKVTVLYE 242
Query: 206 LVSACVADTAEVDNKCCRSRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSL 265
L+SAC++D E D +C R R+GYDARHRV+LRL+ATWL VKW +MEA+E+MV S M +
Sbjct: 243 LLSACLSDLREDDKECKRRRKGYDARHRVALRLLATWLDVKWTKMEAIETMVTCSAMAII 302
Query: 266 SEAGAKEDESIGSENNWDKWKRXXXXXXXXXXXXXLMAITGGLAAPAIAHGLGALAPTFG 325
E + ++E+ G + W K KR L+AITGGLAAPAIA GLGALAPT G
Sbjct: 303 KEQESNKEEAQGKGSKWAKLKRGGIIGAAAITGGTLLAITGGLAAPAIAAGLGALAPTLG 362
Query: 326 SIVPFI 331
+++P I
Sbjct: 363 TLIPVI 368