Miyakogusa Predicted Gene

Lj1g3v2141140.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2141140.3 Non Characterized Hit- tr|H3GKH9|H3GKH9_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,41.67,0.000001,UNCHARACTERIZED,Protein of unknown function
DUF726; seg,NULL,CUFF.28786.3
         (318 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g113090.2 | transmembrane and coiled-coil protein | HC | c...   340   1e-93
Medtr3g113090.1 | transmembrane and coiled-coil protein | HC | c...   339   2e-93
Medtr8g076240.1 | transmembrane protein, putative | HC | chr8:32...   199   2e-51
Medtr5g021430.1 | transmembrane and coiled-coil protein | HC | c...   198   6e-51

>Medtr3g113090.2 | transmembrane and coiled-coil protein | HC |
           chr3:52836529-52830694 | 20130731
          Length = 598

 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/328 (57%), Positives = 218/328 (66%), Gaps = 26/328 (7%)

Query: 3   ETPSMLLPPTHRYXXXXXXXXXXHHSQIHQSPT------------TAQNAASVSDDPELW 50
           E  S +L P  RY          H SQ H+ PT            T  +++S SD+PELW
Sbjct: 2   EVTSSILSPAQRYAAAALFSLALHQSQFHERPTPSSPRTADADAPTTADSSSTSDNPELW 61

Query: 51  IHDNFGLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDK 110
           IHDN GLL PV RFL VD+Q+ +GLKETAGSSSQFRHHLG F K+L+EE DA+S +RLDK
Sbjct: 62  IHDNSGLLLPVFRFLEVDEQAWHGLKETAGSSSQFRHHLGDFFKVLSEEGDASSKDRLDK 121

Query: 111 EAALTKAVDAMXXXXXXXXXXXXXXXXXXXHEQK--SQDYLCNTTAP-PVVEPHSDSKTK 167
           EAALT AVDA                    HEQK  S+D LC+T      V    D +TK
Sbjct: 122 EAALTNAVDA-----TEASMKSIADSSCRGHEQKTRSEDNLCDTELKLYAVGAEPDGETK 176

Query: 168 DSESSALLPQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKC 227
             ESSALLP + Q+ST LEN   EKPLEEAS+ISYQRKVTVLY L+SACVADTAEVD K 
Sbjct: 177 --ESSALLPLETQSSTALEN---EKPLEEASIISYQRKVTVLYTLLSACVADTAEVDKKF 231

Query: 228 CRSRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENN 287
            +SRQGYDARHRVSLRL+A WLGV+WNEMEAMESMVA+S+M SLS+AG KE ESI SE +
Sbjct: 232 SKSRQGYDARHRVSLRLLAVWLGVEWNEMEAMESMVAYSIMESLSKAGEKE-ESIVSETS 290

Query: 288 WDKWKRXXXXXXXXXXXXXLMAITGGIC 315
           WDKWKR             +MAITGG+ 
Sbjct: 291 WDKWKRGGIVGAAAVTGGTVMAITGGLA 318


>Medtr3g113090.1 | transmembrane and coiled-coil protein | HC |
           chr3:52836529-52828749 | 20130731
          Length = 663

 Score =  339 bits (870), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/328 (57%), Positives = 218/328 (66%), Gaps = 26/328 (7%)

Query: 3   ETPSMLLPPTHRYXXXXXXXXXXHHSQIHQSPT------------TAQNAASVSDDPELW 50
           E  S +L P  RY          H SQ H+ PT            T  +++S SD+PELW
Sbjct: 2   EVTSSILSPAQRYAAAALFSLALHQSQFHERPTPSSPRTADADAPTTADSSSTSDNPELW 61

Query: 51  IHDNFGLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDK 110
           IHDN GLL PV RFL VD+Q+ +GLKETAGSSSQFRHHLG F K+L+EE DA+S +RLDK
Sbjct: 62  IHDNSGLLLPVFRFLEVDEQAWHGLKETAGSSSQFRHHLGDFFKVLSEEGDASSKDRLDK 121

Query: 111 EAALTKAVDAMXXXXXXXXXXXXXXXXXXXHEQK--SQDYLCNTTAP-PVVEPHSDSKTK 167
           EAALT AVDA                    HEQK  S+D LC+T      V    D +TK
Sbjct: 122 EAALTNAVDA-----TEASMKSIADSSCRGHEQKTRSEDNLCDTELKLYAVGAEPDGETK 176

Query: 168 DSESSALLPQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKC 227
             ESSALLP + Q+ST LEN   EKPLEEAS+ISYQRKVTVLY L+SACVADTAEVD K 
Sbjct: 177 --ESSALLPLETQSSTALEN---EKPLEEASIISYQRKVTVLYTLLSACVADTAEVDKKF 231

Query: 228 CRSRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENN 287
            +SRQGYDARHRVSLRL+A WLGV+WNEMEAMESMVA+S+M SLS+AG KE ESI SE +
Sbjct: 232 SKSRQGYDARHRVSLRLLAVWLGVEWNEMEAMESMVAYSIMESLSKAGEKE-ESIVSETS 290

Query: 288 WDKWKRXXXXXXXXXXXXXLMAITGGIC 315
           WDKWKR             +MAITGG+ 
Sbjct: 291 WDKWKRGGIVGAAAVTGGTVMAITGGLA 318


>Medtr8g076240.1 | transmembrane protein, putative | HC |
           chr8:32287921-32290517 | 20130731
          Length = 409

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/348 (38%), Positives = 197/348 (56%), Gaps = 45/348 (12%)

Query: 4   TPSMLLPPTHRYXXXXXXXXXXHHSQIHQS---PTTAQN----------------AASVS 44
           TP+  L  T RY          H SQI+Q+   P  A +                + SVS
Sbjct: 8   TPTSFLSSTQRYAAAALFGLSLHDSQINQTRILPLPASDDSISNINRISSSSSSSSDSVS 67

Query: 45  DDPELWIHDNFGLLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANS 104
           DDP LW+H + GLL PV +FL +D  +  GL+ETAGS S   HH+G F++LL++ESD NS
Sbjct: 68  DDPHLWVHHHSGLLRPVFKFLDIDSSAWYGLEETAGSPSA-THHVGPFMRLLSQESDDNS 126

Query: 105 SE---RLDKEAALTKAVDAMXXXXXXXXX-XXXXXXXXXXHEQKSQDYLCNTTAPPV--- 157
           +E   RL++E AL+KAVDA+                    +E + ++     +AP V   
Sbjct: 127 AESAQRLEQELALSKAVDAIVLEMEKNLQPSNSKRERINEYEHQCRE---KYSAPDVQSN 183

Query: 158 -----VEPHSDSKTKDSESSALL-----PQQKQASTELENVTLEKPLEEASLISYQRKVT 207
                V+ + D++ K+++++ L+     PQQ+  +++++    EKP+EE  ++S QRKVT
Sbjct: 184 PEKADVDVNLDNQ-KETDAAPLINLEDPPQQRSDNSKID----EKPIEEVLMLSDQRKVT 238

Query: 208 VLYALVSACVADTAEVDNKCCRSRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSL 267
           VLY L+SAC++D  E D +C R R+GYDARHRV+LRL+ATWL VKW +MEA+E+MV  S 
Sbjct: 239 VLYELLSACLSDLREDDKECKRRRKGYDARHRVALRLLATWLDVKWTKMEAIETMVTCSA 298

Query: 268 MNSLSEAGAKEDESIGSENNWDKWKRXXXXXXXXXXXXXLMAITGGIC 315
           M  + E  + ++E+ G  + W K KR             L+AITGG+ 
Sbjct: 299 MAIIKEQESNKEEAQGKGSKWAKLKRGGIIGAAAITGGTLLAITGGLA 346


>Medtr5g021430.1 | transmembrane and coiled-coil protein | HC |
           chr5:8282675-8274807 | 20130731
          Length = 672

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 185/330 (56%), Gaps = 33/330 (10%)

Query: 9   LPPTHRYXXXXXXXXXXHHSQIHQS------------PTTAQNAASVSDDPELWIHDNFG 56
           L PT RY          H +Q+HQ+            P+++ +  +V +DP+LW+H   G
Sbjct: 16  LTPTQRYAAGALFGLALHQAQLHQTHPLGLSTDDFPSPSSSTSTGAVFEDPDLWVHHTSG 75

Query: 57  LLSPVLRFLGVDDQSSNGLKETAGSSSQFRHHLGSFLKLLAEESDANSSERLDKEAALTK 116
           LL PV  FL +D  + +GL+ET+GSS   RH +G FL+LL+EE D ++++RLD+E AL++
Sbjct: 76  LLRPVFIFLDIDSAAWSGLEETSGSSVATRH-VGPFLRLLSEEYDDDNAKRLDQELALSE 134

Query: 117 AVDAMXXXXXXXXXXXXXXXXX-XXHEQKSQDYLCNTTAPPVVEPHSDS-----KTKDSE 170
           AVDA+                    +E + ++          V+P+S+      +T+  E
Sbjct: 135 AVDALVLSLEKNSESSRSKRKKLREYEHECREKFSTAD----VQPNSEKVDMHLETQQEE 190

Query: 171 SSALL-----PQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDN 225
            +        P +  ++++    T E P+EE  ++SYQRKVTVLY L++AC++D  E + 
Sbjct: 191 DTLFFECEEDPHEGSSNSK----TDEGPVEELMMLSYQRKVTVLYQLLAACLSDIGEKNT 246

Query: 226 KCCRSRQGYDARHRVSLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSE 285
           K  R R+GYDARHRV+LRL+ATWL +KW +MEA+E +V+ S M  + E  + + E+  +E
Sbjct: 247 KYTRRRKGYDARHRVALRLLATWLDIKWTKMEAVEMIVSSSAMAIVKEQESNK-EAQSNE 305

Query: 286 NNWDKWKRXXXXXXXXXXXXXLMAITGGIC 315
           + W KWKR             LMAITGG+ 
Sbjct: 306 SGWAKWKRGGIIGAAALTGGALMAITGGLA 335