Miyakogusa Predicted Gene

Lj1g3v2141080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2141080.1 tr|D0TZ45|D0TZ45_STYJA MADS-domain transcription
factor (Fragment) OS=Styrax japonicus GN=TM6 PE=3
S,45.71,2e-19,coiled-coil,NULL; K-box,Transcription factor, K-box;
AGL97, DNA BINDING / TRANSCRIPTION FACTOR,NULL;,CUFF.28630.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g113030.1 | MADS-box transcription factor | HC | chr3:5280...   210   2e-55
Medtr5g021270.1 | MADS-box transcription factor | HC | chr5:8200...    58   2e-09
Medtr5g021270.2 | MADS-box transcription factor | HC | chr5:8200...    57   3e-09

>Medtr3g113030.1 | MADS-box transcription factor | HC |
           chr3:52800047-52803855 | 20130731
          Length = 229

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/112 (87%), Positives = 104/112 (92%)

Query: 1   MDELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPY 60
           M+ELRLLE EMD AAKA+RERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAE+P +
Sbjct: 118 MEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRF 177

Query: 61  ELMDNGGEYESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPLLF 112
           E+MDNGGEYESVIGFSNLGPRMFALSLQP+HPN HN G  A SDLTTYPLLF
Sbjct: 178 EMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF 229


>Medtr5g021270.1 | MADS-box transcription factor | HC |
           chr5:8200722-8203103 | 20130731
          Length = 231

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 3   ELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYEL 62
           +LR LE++M+++   +RERK+ VI  + DT RKK  +  +++  LL +L+    +P +  
Sbjct: 124 QLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLF 183

Query: 63  MDNGGEYESVIGFSNLGPRMFALSLQPSH---PNAHNSGGGAGSDL 105
            D G E ES +  +N    ++A     SH   P+ H   G    DL
Sbjct: 184 HDEGDE-ESAVALANGASTLYAFCQHHSHLNLPHHHGEEGYKNDDL 228


>Medtr5g021270.2 | MADS-box transcription factor | HC |
           chr5:8200787-8203103 | 20130731
          Length = 232

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 3   ELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYEL 62
           +LR LE++M+++   +RERK+ VI  + DT RKK  +  +++  LL +L  +    P  L
Sbjct: 124 QLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFL 183

Query: 63  MDNGGEYESVIGFSNLGPRMFALSLQPSH---PNAHNSGGGAGSDL 105
             + G+ ES +  +N    ++A     SH   P+ H   G    DL
Sbjct: 184 FHDEGDEESAVALANGASTLYAFCQHHSHLNLPHHHGEEGYKNDDL 229