Miyakogusa Predicted Gene

Lj1g3v2139540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2139540.1 tr|D7MEZ7|D7MEZ7_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.21,1e-16,seg,NULL; RING FINGER PROTEIN 127,NULL; PUA
domain-like,PUA-like domain; LON,Peptidase S16, lon N-te,CUFF.28885.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g112420.1 | ATP-dependent protease LA (lon) domain protein...    99   1e-21

>Medtr3g112420.1 | ATP-dependent protease LA (lon) domain protein |
           HC | chr3:52675931-52677387 | 20130731
          Length = 294

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 65/112 (58%), Gaps = 8/112 (7%)

Query: 21  NPCQNPTRLSINPNFPSSST-------THVLXXXXXXXGGNL-TCSASSFSEKHHTDSPR 72
           +P  N T LS+NP    SST        +VL         +L  CSASSF EKHHT+SP 
Sbjct: 14  SPLLNLTPLSLNPKIFQSSTPTPSPPHLNVLHHSRRRNSTSLLRCSASSFPEKHHTNSPN 73

Query: 73  SDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYTAA 124
           SDD               GAILPLQIFEFRYR+MMHTLL TDLRFGVIY  A
Sbjct: 74  SDDVTELPLFPLPLVLFPGAILPLQIFEFRYRVMMHTLLQTDLRFGVIYNDA 125